Paediatrics chapters

Fever of unknown origin in children

How fever of unknown origin (PUO) is defined in children, the infections, inflammatory diseases and cancers behind it, the stepwise tests, how to read the results, and when to refer.

UHS PGET syllabus: Infectious diseases (10 MCQs), Fever of unknown origin (PUO): definition and paediatric criteria; clinical features; interpretation of results and differential diagnosis; management and specialist referralUpdated November 2026
In 30 seconds
  • In children, fever of unknown origin means fever above 38°C lasting more than 14 days with no cause found after a full history, examination and routine screening tests (or after 1 week of hospital evaluation).
  • Infections are the commonest cause (in Pakistan think typhoid, TB, malaria, brucellosis, UTI, abscess), then inflammatory disease (about 20%, e.g. systemic JIA, SLE, Kawasaki), then malignancy (about 10%, leukaemia, lymphoma, neuroblastoma); about 15% stay undiagnosed.
  • Work-up is stepwise: detailed history and repeated examination, screening tests (CBC, ESR/CRP, LFTs, urine and blood cultures, chest X-ray, ANA), then targeted tests (imaging, serology, bone marrow), and specialist referral if still unexplained.
On this page

Overview

Most fevers in children are short and their cause is obvious. A small group of children have fever that goes on for weeks with no explanation even after a careful assessment. This is fever (or pyrexia) of unknown origin (FUO or PUO). The cause is usually a common disease presenting in an unusual way, not a rare one. The exam tests the definition, the main groups of causes, the order of investigation and the clues that point to each diagnosis.

Fever patterns: three different problems

Nelson separates three situations that are often confused:

PatternMeaningTypical child
Fever with a focusShort fever plus localising symptoms or signs; diagnosis from history and examinationOtitis media, pneumonia, tonsillitis
Fever without a focusAcute fever (a few days) where history and examination find no sourceUsually under 3 years; risk of occult bacteraemia or UTI
Fever of unknown originFever over 14 days with no cause after history, examination and routine testsAny age

Recurrent or periodic fevers (repeated separate episodes with well periods between) are different again: they usually represent a series of acute illnesses or a periodic fever syndrome, not one prolonged fever.

Definition and paediatric criteria

  • Temperature above 38°C (100.4°F).
  • Lasting more than 14 days.
  • No obvious cause despite a complete history, full physical examination and routine screening laboratory tests, or after 1 week of hospital evaluation.

Normal core temperature is kept within a narrow band between about 37°C and 38°C.

Exam trap

The adult definition (3 weeks of fever) is often quoted, but the paediatric definition in Nelson uses 14 days. Answer with the paediatric figure when the question is about a child.

High-yield

Before labelling PUO, prove the fever is real. Nelson advises that a reliable person stays with the child while the temperature is taken in hospital, because factitious fever (or fever induced by a parent, Munchausen syndrome by proxy) is an important cause, especially when the family works in health care.

Causes

Nelson's broad picture:

  • Infections: the commonest group.
  • Inflammatory (connective tissue) diseases: about 20%.
  • Malignancy: about 10% (less common than in adults).
  • No diagnosis: about 15%. In many of these the fever settles on its own without sequelae, though a few later declare a rheumatic disease.

Infections

TypeExamples
Localised (hidden) infectionAbscess (liver, subphrenic, perinephric, pelvic, psoas, dental, brain), osteomyelitis, pyelonephritis, sinusitis, mastoiditis, infective endocarditis, cholangitis, pneumonia
Systemic bacterialTyphoid and other salmonellosis, tuberculosis, brucellosis, leptospirosis, cat-scratch disease (Bartonella), Lyme disease, chronic meningococcaemia
ViralEpstein-Barr virus (infectious mononucleosis), cytomegalovirus, hepatitis viruses, HIV
ParasiticMalaria, extraintestinal amoebiasis (amoebic liver abscess), giardiasis, toxoplasmosis, visceral larva migrans (Toxocara), trypanosomiasis
Fungal and othersDisseminated histoplasmosis and similar; rickettsial infections, Q fever
High-yield

In Pakistan the infections to rule out first are typhoid (Akbar names it among the commonest causes of PUO), tuberculosis, malaria, brucellosis, urinary tract infection, liver abscess and endocarditis in a child with heart disease.

Nelson lists the infections that most often cause PUO in children with a known or newly found immune deficiency: viral hepatitis, EBV, CMV, Bartonella, ehrlichiosis, Salmonella and TB.

Inflammatory diseases

  • Systemic-onset juvenile idiopathic arthritis (Still disease).
  • Systemic lupus erythematosus, juvenile dermatomyositis.
  • Kawasaki disease, polyarteritis nodosa, Behçet syndrome.
  • Inflammatory bowel disease (especially Crohn disease).
  • Rheumatic fever, sarcoidosis, serum sickness.
  • Drug fever.

Malignancy

Leukaemia, lymphoma (including Hodgkin disease), neuroblastoma, Wilms tumour, Ewing sarcoma, hepatoma, atrial myxoma.

Miscellaneous

  • Factitious fever and Munchausen syndrome by proxy.
  • Diabetes insipidus (central and nephrogenic) and anhidrotic ectodermal dysplasia (cannot sweat), familial dysautonomia, hypothalamic (central) fever.
  • Thyrotoxicosis, Addison disease, pancreatitis, poisoning.
  • Periodic fever syndromes and cyclic neutropenia.

Clinical assessment

History

Nelson's checklist of points to ask:

  • How the fever affects activity and health; weight loss.
  • Drugs and any immunosuppressive treatment (drug fever).
  • Past unusual, severe or recurrent infections (immune deficiency).
  • Immunisation status.
  • Raw or unprocessed foods, unpasteurised milk (brucellosis).
  • Pica and contact with soil or untreated water (Toxocara, other parasites).
  • Animal contact, ticks and mosquito exposure, travel.
  • Blood transfusion, recent surgery or dental work, tattoos or piercing, and sexual activity in adolescents.
  • Chemicals at home or from hobbies; ethnic background (inherited periodic fevers).

Examination

Examine fully and repeat the examination regularly, because new signs appear with time. Look especially for:

  • Lymph nodes, liver and spleen.
  • Heart murmur (endocarditis), joints and muscles (JIA, dermatomyositis).
  • Rash (JIA, SLE, Kawasaki), conjunctivae, mouth and teeth.
  • Sinus, mastoid, bone and spine tenderness (osteomyelitis, discitis), abdominal or rectal tenderness (abscess).
  • Signs of weight loss and pallor (malignancy, TB, IBD).
Memory hook

"Common things, odd faces": most PUO is a familiar infection, inflammatory disease or cancer showing an unusual face; keep re-examining until the face becomes recognisable.

Investigations

Investigation is stepwise: simple screening first, then tests guided by any abnormality.

Screening tests (first line)

TestWhat it helps with
Complete blood count with differential and plateletsLeukaemia, infection, inflammation
ESR and CRPConfirms inflammation; a normal ESR makes serious inflammatory disease less likely
Liver transaminasesHepatitis viruses, EBV, typhoid, liver abscess
Urinalysis and urine culturePyelonephritis
Blood cultures (several)Typhoid, endocarditis, occult bacteraemia
Chest X-rayTB, hidden pneumonia, mediastinal lymphoma
ANA, rheumatoid factor, complement (C3, C4, CH50)SLE and other rheumatic disease

In Pakistan, add a malaria blood film or rapid test and consider typhoid culture early, as guided by the clinical picture.

Second-line tests (guided by the first results)

  • TB testing: tuberculin (Mantoux) test or an interferon-gamma release assay.
  • Throat swab and stool culture.
  • HIV antibody, EBV antibody profile, Bartonella antibody; other serology such as brucella when exposure fits.
  • Lumbar puncture for CSF analysis and culture.
  • Imaging: ultrasound, CT or MRI of chest, abdomen and head; radionuclide scans.
  • Bone marrow biopsy for cytology and culture (leukaemia, disseminated TB, other infections).

Interpreting the results

FindingThink of
Anaemia, low platelets, blasts or very high or low white countLeukaemia: bone marrow examination
Atypical lymphocytes, raised transaminasesEBV (infectious mononucleosis), CMV, hepatitis
Low white count in a toxic child with prolonged feverTyphoid
EosinophiliaParasites (visceral larva migrans), drug reaction
Pus cells and bacteria in urinePyelonephritis
High ESR, anaemia, raised neutrophils and platelets, evanescent rash, arthritisSystemic JIA
Positive ANA, low complement, cytopeniasSLE
Murmur plus positive blood culturesInfective endocarditis
Mass or abscess on imagingAbscess (amoebic or pyogenic), lymphoma, neuroblastoma, Wilms tumour
Exam trap

A child with prolonged fever and joint pain plus cytopenias may be labelled JIA when the real diagnosis is leukaemia. Look carefully at the film and examine the marrow before treating as an inflammatory disease.

Management and specialist referral

Nelson's approach (Figure 96-2):

  1. Detailed history and examination.
  2. Unstable child or organ- or life-threatening signs: admit, take the appropriate tests and start treatment immediately.
  3. Stable child with a clear diagnosis: confirm with the relevant test and treat.
  4. Stable child, no diagnosis: screening tests, then reassess; if still unclear, further tests (special cultures, PCR, serology, biopsy, imaging).
  5. Still no diagnosis: refer.

Points of practice:

  • Prolonged observation and repeated evaluation are central; many diagnoses appear only with time.
  • Avoid blind antibiotics or steroids in a stable child, because they can hide the diagnosis (partly treated endocarditis or osteomyelitis, masked leukaemia) without curing it.
  • Specialist referral: Nelson suggests involving infectious disease, immunology, rheumatology or oncology specialists, depending on the leads.
  • Treat the cause once found; give antipyretics for comfort and keep nutrition and hydration up meanwhile.
High-yield

A child with prolonged fever who is unstable or has organ-threatening signs is admitted and treated at once; the slow stepwise work-up is only for the stable child.

Prognosis

When no cause is found, the fever often resolves without lasting harm, but follow-up is needed because a rheumatic disease may declare itself later.

Fever without a focus in young children

This is not PUO, but it is examined alongside it.

Infants under 3 months

  • Higher risk of serious bacterial infection; often only fever and poor feeding.
  • Organisms: group B streptococcus, E. coli, Listeria in neonates; pneumococcus, Haemophilus influenzae, non-typhoidal Salmonella and meningococcus at 1-3 months.
  • All febrile infants under 4 weeks, and ill-looking infants under 3 months, are admitted: blood, urine and CSF cultures, then IV antibiotics (typically ampicillin plus cefotaxime or gentamicin); add acyclovir if neonatal herpes simplex is possible.
  • Nelson's low-risk infant: older than 1 month, well-appearing, no focus, no prematurity or previous antibiotics, white count 5,000-15,000/µL, and fewer than 10 white cells per high-power field in urine. Such infants can be managed as outpatients with close follow-up.

Children 3 months to 3 years

  • Most have self-limiting viral illness; a few have occult bacteraemia or a UTI.
  • UTI is the commonest serious bacterial infection identified in this age group, so check urinalysis and urine culture.
  • Risk of occult bacteraemia rises with temperature of 39°C or more and white count of 15,000/mm³ or more; in well-appearing children vaccinated against pneumococcus and Hib it is about 0.2%.
  • Close follow-up (re-check within 24 hours and over at least 72 hours) is essential whatever the treatment.
  • Sickle cell disease: impaired splenic function puts these children at high risk of bacteraemia, so fever needs cultures and empirical antibiotics.
Exam focus

Expect: the paediatric definition of PUO (over 38°C for more than 14 days, or no cause after 1 week in hospital); infections as the commonest cause, with typhoid, TB, malaria, brucellosis, UTI and abscesses in local practice; systemic JIA, SLE, Kawasaki and IBD as inflammatory causes; leukaemia, lymphoma and neuroblastoma as malignant causes; factitious fever; the first-line screening tests (CBC, ESR, CRP, LFTs, urine and blood cultures, chest X-ray, ANA and complement); bone marrow biopsy for suspected leukaemia; referral to infectious disease, rheumatology or oncology; and the difference between PUO and fever without a focus (UTI commonest serious infection under 3 years; febrile neonates admitted).

Quick revision

  • PUO in a child: fever over 38°C for more than 14 days, cause unknown after full assessment, or after 1 week in hospital.
  • Infections first; inflammatory about 20%; malignancy about 10%; undiagnosed about 15%.
  • Local leaders: typhoid, TB, malaria, brucellosis, UTI, liver abscess, endocarditis.
  • Confirm the fever; think of factitious fever.
  • Screening: CBC, ESR, CRP, LFTs, urine and blood cultures, chest X-ray, ANA, RF, C3/C4.
  • Then targeted tests: TB tests, serology, imaging, LP, bone marrow.
  • Avoid blind antibiotics or steroids; observe and re-examine.
  • Refer to infectious disease, immunology, rheumatology or oncology when unexplained.

Written by The House Job from standard references (Basis of Paediatrics by Pervez Akbar; Nelson Essentials of Paediatrics).

FAQ

How long must fever last before it is called PUO in a child?

Nelson uses more than 14 days of fever above 38°C with no cause found after a complete history, examination and screening tests, or after a week of hospital evaluation.

What is the commonest cause of PUO in children?

Infection, usually a common infection presenting atypically. In Pakistan typhoid, tuberculosis, malaria, brucellosis, UTI and abscesses head the list.

Why is a bone marrow examination sometimes needed?

It can show leukaemia or another marrow cancer, and marrow culture can grow organisms such as TB or Salmonella when blood tests are unhelpful.

Should a stable child with PUO be given antibiotics to see if the fever settles?

Generally no. Blind antibiotics or steroids can mask the diagnosis without treating it; observe, re-examine and test in steps instead.