Surgery chapters

Investigations for urinary tract disease

The tests used to work up urinary tract disease: urine dipstick, microscopy and culture, cytology, blood tests and PSA, cystoscopy, ultrasound, KUB, CT, MRI, isotope renograms, flow rate and urodynamics, and which test answers which question.

UHS PGET syllabus: Genito-urinary surgery (15 MCQs, Group 1), Appropriate tests for urinary tract pathologyUpdated October 2026
In 30 seconds
  • Start with urine (dipstick, microscopy, culture, cytology) and blood (U&E/eGFR, PSA where relevant); a trace of blood on dipstick counts as negative.
  • For imaging, ultrasound screens for hydronephrosis and masses, non-contrast CT KUB is the test of choice for stones, and contrast CT stages kidney and bladder cancer.
  • DMSA shows cortical scars and split function, MAG3 with diuretic proves obstruction, and flow rate plus residual (then urodynamics) assesses the bladder outlet.
On this page

Overview

Urological diagnosis rests on a small set of tests. Each one answers a particular question: Is there infection? Is there bleeding, and where from? Is there a stone? Is the kidney obstructed? Is the bladder outlet blocked?

Exam questions usually give a clinical scenario and ask for the single best next test. Learn the "question → test" pairs in this chapter.

Urine tests

Dipstick

A reagent strip checks glucose, ketones, bilirubin, urobilinogen, specific gravity, pH, protein, blood, nitrites and leucocyte esterase.

  • Nitrites: most Gram-negative bacteria turn nitrate into nitrite. False negatives are common.
  • Leucocyte esterase: marks pus cells.
  • Blood: the pad reacts to haem, so haemoglobin and myoglobin also give a positive result without red cells.
  • A trace of blood on dipstick should be treated as negative.

Mid-stream urine (MSU) microscopy and culture

The MSU confirms a UTI, names the organism and gives antibiotic sensitivities. Normal urine holds a few white cells (up to about 40 × 10⁶/L) and epithelial cells.

  • Pyuria with no growth (sterile pyuria): think of TB, partly treated infection, stones, carcinoma in situ (CIS), chlamydia or gonorrhoea, and papillary necrosis.
  • Red cell casts and dysmorphic red cells: point to a glomerular cause, so the patient needs a nephrology work-up.

Early-morning urine (EMU)

For suspected genitourinary TB, send three EMU samples on consecutive days for Ziehl–Neelsen staining and TB culture. Culture takes about 6 weeks.

Urine cytology

Looks for malignant urothelial cells.

  • About 15% of low-grade transitional cell carcinomas give positive cytology, compared with about 50% of high-grade ones.
  • A positive result is highly specific. It is most useful for CIS and high-grade disease, especially when cystoscopy looks normal.
High-yield

Urine cytology misses most low-grade papillary tumours. A negative result never excludes bladder cancer, so cystoscopy is still needed.

Blood tests

TestUse
FBCAnaemia (adverse sign in renal cancer); polycythaemia in some renal tumours
Urea, creatinine, eGFRRenal function; eGFR is more informative than creatinine alone
Calcium, uric acidMetabolic screen in stone formers
Alkaline phosphataseRaised with bone metastases (often prostate cancer)
PSAProstate cancer detection and follow-up
AFP, β-hCG, LDHTesticular germ cell tumours
  • Serum creatinine stays normal with disease in one kidney if the other kidney works well.
  • Cisplatin-based chemotherapy generally needs an eGFR of 50 mL/min or more.
  • Kidney and bladder cancers have no routine serum marker.

Prostate-specific antigen (PSA)

PSA is a glycoprotein made by prostatic epithelium. Its normal job is to liquefy semen. It leaks into the blood when prostatic architecture is disturbed by BPH, prostatitis or cancer, so it is organ-specific but not cancer-specific.

FactorEffect on PSA
UTI or prostatitisRises; takes about 6 weeks after treatment to return to baseline
Digital rectal examinationNo significant change
Finasteride or dutasteride (5α-reductase inhibitors)Lowers PSA by about half; multiply by 2 after at least 6 months of use
AgeNormal range rises with age

Age-specific upper limits often quoted: 2.5 ng/mL (40–49 years), 3.5 (50–59), 4.5 (60–69) and 6.5 (70–79).

  • A lower percentage of unbound (fPSA) PSA favours cancer.
  • PSA velocity and density have added little in practice; PSA doubling time helps in men under surveillance.
  • A bone scan is rarely positive until PSA is above about 40 ng/mL.
Worked example: PSA on finasteride

A 64-year-old man has taken finasteride for 2 years. Measured PSA = 2.1 ng/mL.
Adjusted PSA = 2.1 × 2 = 4.2 ng/mL
This is above the commonly used referral value of 3 ng/mL for men aged 50–69, so further assessment is needed.

Exam trap

A "normal-looking" PSA in a man on finasteride or dutasteride is falsely low. Always double it before deciding.

Endoscopy

Cystoscopy

  • Flexible cystoscopy: done under local anaesthetic as an outpatient. Mainly diagnostic; small biopsies and stent removal are possible.
  • Rigid cystoscopy: under general anaesthetic; allows resection, larger biopsies and ureteric instrumentation.
  • Detection of flat lesions and CIS is improved by narrow band imaging and photodynamic (blue light) diagnosis, where a fluorescent agent instilled in the bladder makes tumour glow pink.

Retrograde studies and ureteroscopy

  • Retrograde ureteropyelography: contrast is injected up a fine ureteric catheter placed at cystoscopy, outlining the ureter and pelvis (stones, tumours, strictures).
  • Ureteroscopy: semi-rigid for the ureter; flexible for the renal pelvis and calyces. It is both diagnostic and therapeutic (stones, tumours).

Imaging

Ultrasound (USS)

  • First-line, cheap, no radiation, can be done at the bedside.
  • Excellent for hydronephrosis, renal masses and cysts, scarring, bladder tumours, bladder stones, a thick trabeculated bladder, diverticula and post-void residual.
  • Stones cast an acoustic shadow, but USS misses some stones.
  • Poor for the ureter unless it is dilated.
  • Guides percutaneous nephrostomy insertion and is the key test for scrotal swellings.
  • Transrectal ultrasound (TRUS) shows prostate zones and volume and guides biopsy. The classic cancer appearance is a hypoechoic area in the peripheral zone.

Plain KUB X-ray

Covers kidneys, ureters and bladder. Used to see whether a stone is radio-opaque, to follow stones during and after lithotripsy, and to check double-J stent position.

Exam trap

Phleboliths (calcified pelvic veins) are easily mistaken for lower ureteric stones on a KUB. They are round and often have a lucent centre.

Intravenous urography (IVU)

Contrast is excreted by the kidneys and outlines the collecting system. It is now rarely used; its role in stones has been taken over by non-contrast CT. Classic IVU signs still appear in MCQs (e.g. cobra-head ureterocele, clubbed calyces, filling defects).

Computed tomography (CT)

CT typeMain use
Non-contrast CT KUBTest of choice for urinary stones
Contrast CT chest, abdomen and pelvisStaging renal cancer, muscle-invasive bladder cancer and testicular cancer
CT urography (with excretory phase)Visible haematuria; upper tract urothelial tumours
Contrast CTRenal abscess, pyelonephritis complications, renal masses; fat in an angiomyolipoma
High-yield

Almost every stone, including uric acid stones that do not show on plain X-ray, is visible on non-contrast CT.

The Bosniak classification of renal cysts (CT or MRI)

CategoryFeaturesApproximate malignancy riskAction
ISimple cyst, hairline wall, no septa, calcium or enhancement~0%Nothing
IIFew thin septa, fine calcification, small non-enhancing high-density cyst~0%Nothing
IIFMore septa or slight thickening, no enhancing soft tissue~5%Follow-up imaging
IIIThick irregular enhancing walls or septa~50%Biopsy or surgery
IVEnhancing soft-tissue component~100%Surgical removal

Magnetic resonance imaging (MRI)

  • Stages several urological cancers.
  • Multiparametric MRI of the prostate is now central before biopsy. Lesions are scored 1 to 5 on the PI-RADS scale and can be targeted.

Nuclear medicine

ScanWhat it showsTypical use
DMSA (Tc-99m)Binds the proximal tubules of the cortex; static imageRenal scarring (children after UTI), split (differential) function
MAG3 (Tc-99m) or DTPADynamic uptake and drainage curveUpper tract obstruction, e.g. PUJ obstruction; given with furosemide
Bone scanSkeletal metastasesHigh-risk prostate cancer
PET/CTMetabolic imagingResidual mass after seminoma; recurrent prostate cancer (choline)

A normal MAG3 curve rises steeply, peaks at about 2–5 minutes, then falls as tracer drains. In obstruction the tracer stays in the pelvis even after a diuretic.

Memory hook

DMSA = Damage (scars and static cortex). MAG3 = Moves (dynamic drainage).

Whitaker test

A rarely needed pressure-flow test: fluid is run into the renal pelvis through a nephrostomy at 10 mL/min while pressure is measured. An abnormal rise in pressure confirms obstruction.

Lower tract contrast studies

  • Micturating cystourethrogram (MCU): vesicoureteric reflux and posterior urethral valves.
  • Retrograde (ascending) urethrogram: urethral stricture and urethral injury; combined with a descending study to plan urethroplasty.
  • Cystogram: bladder rupture after trauma.
High-yield

Ultrasound shows dilatation, not obstruction. A dilated but non-obstructed system (e.g. after a relieved blockage or in reflux) needs a diuretic renogram to decide.

Tests of bladder function

Flow rate and residual

The first bladder tests for men with LUTS and women with recurrent UTI or LUTS. The man should void at least 150–200 mL, ideally on more than one occasion.

Peak flow (Qmax)Interpretation
More than 15 mL/sSignificant obstruction unlikely
10–15 mL/sEquivocal
Below 10 mL/sSuggests bladder outlet obstruction (or a weak bladder)
  • A long, flat, plateau-shaped curve suggests a urethral stricture.
  • Post-void residual is measured by ultrasound. A single high reading should be repeated.

Urodynamics (pressure-flow study)

Fine catheters in the bladder and rectum measure bladder and abdominal pressure, so true detrusor pressure is obtained by subtraction.

FindingMeaning
Involuntary detrusor contractions during fillingOveractive bladder (detrusor overactivity)
High voiding pressure with low flowBladder outlet obstruction
Leakage with cough, no detrusor riseGenuine stress incontinence
No detrusor contractionAtonic bladder (e.g. diabetic neuropathy, pelvic nerve injury)
Detrusor contracts while sphincter also contractsDetrusor–sphincter dyssynergia (e.g. multiple sclerosis, cord injury)

A normal bladder fills to about 400–550 mL with a pressure rise of less than 15 cmH₂O. Normal male voiding pressure is up to about 60 cmH₂O; above 80 cmH₂O is high.

Exam trap

Low flow alone cannot tell obstruction from a weak detrusor. Only a pressure-flow study separates them. It is advised before surgery in men with neurological disease, mainly storage symptoms or borderline flow.

Choosing the right test

Clinical questionBest test
Loin-to-groin pain, suspected stoneNon-contrast CT KUB
Painless visible haematuriaFlexible cystoscopy + CT urography (USS at minimum)
Fever, loin pain, ? obstructed infected kidneyUrgent ultrasound
Child after febrile UTI: scars?DMSA
Child: reflux? valves?MCU
Dilated pelvis: obstructed or not?MAG3 diuretic renogram
Sterile pyuriaEMU ×3 for AFB
Young man, poor streamFlow rate then retrograde urethrogram
Raised PSAMultiparametric MRI, then targeted biopsy
Scrotal lumpScrotal ultrasound (+ tumour markers)
Exam focus

Expect: the imaging test of choice for ureteric stones (non-contrast CT), DMSA versus MAG3 versus MCU in children, the meaning of sterile pyuria and the TB urine test, dipstick traps (trace blood, myoglobin), PSA modifiers (UTI, finasteride, DRE), cytology sensitivity for low- versus high-grade tumours, Bosniak categories, retrograde urethrogram for stricture or urethral injury, and flow-rate cut-offs (above 15 normal, below 10 obstructed).

Quick revision

  • Trace blood on dipstick = negative; haem pad also detects myoglobin and haemoglobin.
  • Sterile pyuria → think TB → three early-morning urines.
  • Cytology: specific, insensitive; good for CIS and high grade.
  • PSA: raised by UTI (6 weeks to settle), halved by 5α-reductase inhibitors, little changed by DRE.
  • Stones: non-contrast CT; IVU obsolete; phleboliths mimic stones on KUB.
  • DMSA = scars and split function; MAG3 + furosemide = obstruction.
  • Bosniak III ~50% and IV ~100% malignant.
  • Qmax above 15 reassuring, below 10 obstructed; plateau curve = stricture.
  • Urodynamics separates obstruction from a weak detrusor.

Written by The House Job from standard references (Bailey & Love; Kumar and Clark's Clinical Medicine).

FAQ

What is the investigation of choice for a suspected kidney or ureteric stone?

A non-contrast CT of the kidneys, ureters and bladder. It shows nearly all stones, gives their size and position, and picks up other causes of pain.

Which scan shows renal scarring after urinary infection in a child?

A DMSA scan. The tracer binds the renal cortex, so scars appear as defects and split function can be measured.

How is obstruction of the renal pelvis proven?

With a MAG3 (or DTPA) diuretic renogram. In a truly obstructed kidney the tracer stays in the pelvis even after furosemide.

Why is a single low flow rate not enough to diagnose prostatic obstruction?

A weak detrusor or a small voided volume also gives a low flow. A pressure-flow study is needed to show the high voiding pressure of true obstruction.