Surgery chapters

Anorectal malformations, imperforate anus and Hirschsprung disease

The two main causes of low intestinal obstruction in the newborn: anorectal malformations (imperforate anus with or without a fistula) and Hirschsprung disease (aganglionic distal bowel), with their diagnosis and surgery.

UHS PGET syllabus: Paediatric surgery (15 MCQs, Group 1), Congenital anomalies managed by neonatal surgeons: anorectal malformations, Hirschsprung disease; imperforate anus as a cause of intestinal obstructionUpdated October 2026
In 30 seconds
  • Anorectal malformations: the rectum ends blind or opens as a fistula away from the normal anal site; boys most often have a rectourethral (rectobulbar) fistula, girls a rectovestibular fistula; low lesions get an anoplasty, high lesions a colostomy then PSARP.
  • Hirschsprung disease is absence of ganglion cells in the distal bowel from failed neural crest migration, usually rectosigmoid; it presents with delayed meconium, distension and bilious vomiting.
  • Diagnosis needs a rectal suction biopsy (no ganglion cells, thick nerves, raised acetylcholinesterase); treatment is resection and pull-through of normal bowel; the big danger is enterocolitis.
On this page

Overview

Both conditions cause low intestinal obstruction in the newborn: abdominal distension, failure to pass meconium normally and, later, bilious vomiting.

  • An anorectal malformation (ARM) is a structural problem: no normal anus.
  • Hirschsprung disease is a functional problem: an anus is present, but the distal bowel has no nerve cells and cannot relax.

Every newborn examination must include inspection of the perineum and a note of when meconium was first passed.

Anorectal malformations (imperforate anus)

Definition

A spectrum in which the anus is absent (imperforate) or the rectum opens through a fistula that does not pass through the sphincter muscle complex and opens away from the normal anal site (onto the perineum, urethra, bladder, vestibule or vagina).

The incidence is about 1 in 4000–5000 births. Abnormalities of the sacrum and the urinary and genital tracts frequently coexist.

Classification (simplified)

The old high / low division depends on where the rectum ends in relation to the pelvic floor (levator ani / puborectalis).

BoysGirls
Perineal (cutaneous) fistula: lowPerineal fistula: low
Rectourethral fistula, bulbar (commonest in boys)Rectovestibular fistula (commonest in girls; opens in the vestibule just behind the vagina, not into it)
Rectourethral fistula, prostaticCloaca: rectum, vagina and urethra join in one common channel with a single perineal opening (complex)
Rectovesical (bladder neck) fistula: highest; worst outlookImperforate anus without fistula
Imperforate anus without fistula (often in Down syndrome)Rectal atresia / stenosis (rare)
High-yield

Boys: commonest is imperforate anus with a rectourethral (rectobulbar) fistula. Girls: commonest is a rectovestibular fistula. A single perineal opening in a girl means a cloaca.

High-yield

Decide high versus low after about 24 hours, once gas has reached the rectal pouch and meconium has had time to appear through any fistula.

Associated anomalies

  • VACTERL (vertebral, anorectal, cardiac, tracheo-oesophageal, renal, limb).
  • Sacral anomalies and tethered spinal cord (affect continence).
  • Genitourinary anomalies (very common, especially with high lesions).
  • Check: echocardiogram, renal ultrasound, spinal ultrasound/X-ray of the sacrum, pass an NG tube to exclude oesophageal atresia.

Clinical assessment of the newborn

Inspect the perineum carefully and wait. In the first 24 hours the rectum fills with gas and meconium is pushed through any fistula.

FindingMeaning
Meconium on the perineum (in a midline raphe, "bucket handle", anal membrane)Low lesion (perineal fistula)
Meconium in the urine / air in the bladder (boys)Rectourethral or rectovesical fistula (high)
Flat bottom, poor gluteal cleft, no anal dimpleHigh lesion, poor sphincters
Meconium from the vestibuleRectovestibular fistula
One perineal opening (girl)Cloaca
Exam trap

A baby with a fistula can pass meconium, so an ARM may be missed for weeks or months if the perineum is not examined properly.

Investigations

  • Cross-table lateral prone X-ray (prone, hips flexed) after about 24 hours, with a marker on the anal dimple: the distance from the rectal gas to the skin shows whether the lesion is high or low. The older invertogram (baby held upside down, Wangensteen–Rice) works on the same idea but is now rarely used.
  • Perineal ultrasound to measure the gap.
  • Later: distal loopogram (contrast through the colostomy) to show the fistula before definitive surgery.

Management

  1. First 24 hours: nil by mouth, NG tube, IV fluids and antibiotics; look for associated anomalies.
  2. Low lesion (perineal fistula): anoplasty in the neonatal period (or simple dilatation of some fistulas).
  3. High or uncertain lesion: divided colostomy in the newborn period, then definitive repair after a few months: posterior sagittal anorectoplasty (PSARP, Peña procedure), separating any fistula from the urinary tract, with abdominal (or laparoscopic) mobilisation if very high.
  4. After repair: a programme of anal dilatations, then colostomy closure.
  5. Cloaca: complex reconstruction of rectum, vagina and urethra.

Outcome

  • Bowel control depends on the level of the lesion and the state of the sacrum and spine.
  • Low lesions tend to cause constipation; high lesions tend to cause faecal incontinence.
  • Children with poor control can achieve social continence with a bowel management programme or antegrade colonic enemas through an appendicostomy (Malone procedure).
Memory hook

"Low = constipated, High = incontinent."

Hirschsprung disease

Definition and cause

Congenital absence of ganglion cells in both the myenteric (Auerbach) and submucosal (Meissner) plexuses of the distal bowel, with thickened (hypertrophic) nerve trunks.

  • Cause: failure of neural crest cells (vagal origin) to migrate all the way down the gut (craniocaudal migration). So the aganglionic segment always starts at the anus and extends upwards without skip areas.
  • The aganglionic bowel is in tonic spasm and cannot relax: a functional obstruction. The normal bowel above it dilates (megacolon).
  • Between them is a funnel-shaped transition zone.

Extent

ExtentApprox. share
Short segment: rectum and sigmoidAbout 75%
Long segment: further up the colonAbout 15%
Total colonic aganglionosis (± terminal ileum)About 10%

(Figures from Bailey & Love.)

Epidemiology and genetics

  • About 1 in 5000 live births; boys about 4:1 (less marked in long-segment disease).
  • RET proto-oncogene mutations on chromosome 10 (also endothelin pathway genes).
  • Associated with Down syndrome and other syndromes (e.g. Waardenburg); familial cases occur.
  • MEN 2 shares the RET link.

Clinical features

Newborn (most cases):

  • Delayed passage of meconium (none in the first 24–48 hours).
  • Abdominal distension and bilious vomiting (low obstruction).
  • On rectal examination: tight empty rectum, then an explosive gush of gas and stool when the finger is withdrawn ("squirt" or "blast" sign), with temporary relief.

Older child:

  • Chronic severe constipation from birth, not responding to laxatives.
  • Gross distension, visible peristalsis, failure to thrive, ribbon-like stools.
  • Empty rectum on examination, unlike functional constipation where the rectum is full of hard stool and there is soiling.
FeatureHirschsprung diseaseFunctional constipation
OnsetFrom birth, delayed meconiumAfter the first year, often at toilet training
RectumEmpty, tightFull of hard stool
SoilingRareCommon (overflow)
GrowthPoorNormal
EnterocolitisRiskNo

Hirschsprung-associated enterocolitis

The most dangerous complication, before or even after surgery:

  • Fever, explosive foul diarrhoea, distension, lethargy, sometimes bloody stool, shock and perforation.
  • Treat with rectal washouts (saline), IV fluids, antibiotics (including anaerobic cover), and decompression; a stoma if not settling.
High-yield

In a baby with delayed meconium and later foul diarrhoea with distension, think Hirschsprung enterocolitis. It can be fatal.

Investigations

TestFinding
Plain abdominal X-rayDilated bowel loops, no gas in the rectum
Contrast enemaNarrow distal (aganglionic) segment, a cone-shaped transition zone, dilated proximal bowel; retained contrast after 24 hours. May be normal in neonates and in total colonic disease
Anorectal manometryAbsent rectoanal inhibitory reflex (the internal sphincter does not relax when a rectal balloon is inflated); useful in older children
Rectal suction biopsy (gold standard)Taken above the dentate line; no ganglion cells in the submucosa, hypertrophic nerve trunks, increased acetylcholinesterase-positive fibres; loss of calretinin staining. Full-thickness biopsy if suction biopsy is not diagnostic
Exam trap

On contrast enema the narrow segment is the diseased one, and the dilated segment above it is normal bowel. Students often choose the dilated part as abnormal.

Management

  • Initial: decompression with rectal washouts (and NG tube); treat enterocolitis; or a stoma in normally innervated bowel (levelling biopsies at operation confirm ganglion cells).
  • Definitive: resect the aganglionic segment and bring normal ganglionic bowel down to the anus (pull-through). Named operations:
    • Swenson: rectum removed down to just above the anus, end-to-end anastomosis;
    • Duhamel: normal colon brought down behind the rectum, rectum left in place;
    • Soave: endorectal pull-through within a stripped rectal muscle cuff;
    • Transanal endorectal pull-through (now common for short-segment disease), with or without laparoscopic assistance.
  • Can be done in one stage or after a stoma.

Outcome

Most children end up with good bowel control. A sizeable minority still have ongoing constipation, soiling or incontinence, or recurrent enterocolitis. Other complications include anastomotic leak or stricture.

Memory hook

"No nerves, no relaxation, no meconium."

Exam focus

Expect: commonest ARM in boys (rectourethral fistula) and girls (rectovestibular fistula), cloaca, how high and low lesions are distinguished (perineal meconium, meconium in urine, lateral prone X-ray after 24 hours), anoplasty versus colostomy and PSARP, VACTERL; Hirschsprung pathogenesis (neural crest migration failure), plexuses involved, extent (rectosigmoid commonest), RET and Down syndrome, delayed meconium, squirt sign, enterocolitis, rectal suction biopsy findings (acetylcholinesterase, absent ganglion cells), absent rectoanal inhibitory reflex, the narrow segment being abnormal, and named pull-through operations.

Quick revision

  • ARM: boys rectourethral (bulbar) fistula; girls rectovestibular fistula; single opening = cloaca.
  • Meconium on perineum = low; in urine = high (urinary fistula).
  • Wait 24 hours; lateral prone X-ray or perineal ultrasound.
  • Low: anoplasty. High: colostomy, then PSARP.
  • Low lesions constipate; high lesions leak.
  • Hirschsprung: no ganglion cells from the anus upwards; neural crest failure.
  • 75% rectosigmoid; boys 4:1; RET, Down syndrome.
  • Delayed meconium, distension, bilious vomiting; squirt sign.
  • Suction biopsy: no ganglion cells, raised acetylcholinesterase.
  • Pull-through (Swenson, Duhamel, Soave, transanal); beware enterocolitis.

Written by The House Job from standard references (Bailey & Love; Basis of Paediatrics).

FAQ

What is the commonest anorectal malformation in a boy?

An imperforate anus with a fistula from the rectum to the bulbar urethra (rectourethral fistula).

Why can a baby with an anorectal malformation still pass meconium?

Meconium can come out through a fistula onto the perineum, urethra or vestibule, which is why careful perineal inspection is essential.

What is the gold standard test for Hirschsprung disease?

A rectal suction biopsy showing no ganglion cells in the submucosa, thickened nerve trunks and increased acetylcholinesterase activity.

Which segment is abnormal on a contrast enema in Hirschsprung disease?

The narrow distal segment; the dilated bowel above the transition zone is normally innervated.

What is the most serious complication of Hirschsprung disease?

Enterocolitis, with fever, explosive foul diarrhoea and distension, which can progress to perforation and death.