FCPS Part 1 Biochemistry

Water-soluble vitamins

Water-Soluble Vitamins: B Complex and Vitamin C, Coenzymes and Deficiencies

B vitamins and vitamin C: coenzyme forms, enzymes, deficiency syndromes (beriberi, Wernicke, pellagra, megaloblastic anaemia, scurvy) and causes. Every deficiency is explained from the enzyme the vitamin serves, so the clinical picture and the lab tests follow.

Why these vitamins matter

  • Water-soluble vitamins are mostly coenzymes that are not stored for long and are lost in urine, so deficiency appears within weeks to months. B12 is the exception: liver stores last 3–5 years.
  • Each deficiency syndrome makes sense once you know which reaction stops: tissues with high turnover (marrow, gut, skin) or high energy use (nerve, heart) fail first.
VitaminCoenzymeKey enzymesDeficiency
B1 thiamineThiamine pyrophosphate (TPP)Pyruvate dehydrogenase, α-ketoglutarate dehydrogenase, transketolase, branched-chain α-ketoacid dehydrogenaseBeriberi, Wernicke–Korsakoff
B2 riboflavinFAD, FMNSuccinate dehydrogenase, electron transport chain, glutathione reductaseAngular stomatitis, cheilosis, magenta tongue, corneal vascularisation
B3 niacinNAD⁺, NADP⁺Dehydrogenases (redox)Pellagra
B5 pantothenic acidCoenzyme AAcetyl-CoA formation, fatty acid synthaseRare: burning feet, dermatitis
B6 pyridoxinePyridoxal phosphateTransaminases, decarboxylases, ALA synthase, glycogen phosphorylaseNeuropathy, seizures, sideroblastic anaemia
B7 biotinBiotinCarboxylases: pyruvate, acetyl-CoA, propionyl-CoADermatitis, alopecia, lactic acidosis
B9 folateTetrahydrofolateOne-carbon transfer: thymidylate and purine synthesisMegaloblastic anaemia, neural tube defects
B12 cobalaminMethylcobalamin, adenosylcobalaminMethionine synthase, methylmalonyl-CoA mutaseMegaloblastic anaemia plus neurological damage
C ascorbic acidAscorbateProlyl and lysyl hydroxylase, dopamine β-hydroxylaseScurvy
  • Pyruvate dehydrogenase (and α-ketoglutarate dehydrogenase) needs five cofactors: thiamine (B1), lipoic acid, CoA (B5), FAD (B2) and NAD (B3). Biotin is not one of them: biotin serves carboxylases, which add CO₂ (acetyl-CoA to malonyl-CoA; pyruvate to oxaloacetate).

Remember Decarboxylating dehydrogenases use thiamine; carboxylases use biotin; transaminases use B6.

Thiamine (B1)

  • TPP is needed to feed glucose carbon into the Krebs cycle (PDH, α-KGDH) and for the pentose phosphate pathway (transketolase). Without it, glucose-dependent brain and heart cannot make enough ATP, and lactate rises.
  • Causes: alcoholism (poor intake and absorption), diets of polished rice, hyperemesis gravidarum, prolonged vomiting, bariatric surgery, refeeding. Raw fish and shellfish contain thiaminase, which destroys thiamine; tea and betel nut contain anti-thiamine factors.
  • Dry beriberi: symmetrical sensorimotor neuropathy, burning feet, wasting. Wet beriberi: vasodilatation causing high-output heart failure and oedema (a cause of dilated cardiomyopathy).
  • Wernicke encephalopathy: confusion, ophthalmoplegia (nystagmus, lateral rectus palsy) and ataxia; lesions in the mammillary bodies, medial thalamus and periaqueductal grey. Give IV thiamine before glucose, because glucose drives the remaining thiamine into use and can precipitate it.
  • Korsakoff syndrome: anterograde and retrograde amnesia with confabulation; often permanent.
  • Thiamine status is best assessed by red cell transketolase activity (and its rise when TPP is added).

Exam trap A fisherman on raw fish and polished rice with neuropathy and oedema has thiamine deficiency from thiaminase, not B12 deficiency.

Riboflavin (B2) and niacin (B3)

  • Riboflavin deficiency affects rapidly turning-over surfaces: angular stomatitis, cheilosis, glossitis, corneal vascularisation, seborrhoeic dermatitis, normocytic anaemia.
  • Niacin can be made from tryptophan (60 mg tryptophan gives 1 mg niacin; needs B2 and B6).
  • Pellagra: dermatitis in sun-exposed skin (Casal necklace), diarrhoea, dementia, and death.
  • Causes: maize diets (niacin bound, low tryptophan), Hartnup disease (defective neutral amino acid transport, including tryptophan), carcinoid syndrome (tryptophan diverted to serotonin), isoniazid (blocks B6, needed to make niacin), alcoholism.
  • Pharmacological niacin is the most effective drug for raising HDL and lowers triglycerides and LDL; it causes flushing (prostaglandin-mediated, reduced by aspirin), hyperglycaemia and hyperuricaemia.

Pyridoxine (B6)

  • Pyridoxal phosphate is the cofactor for transamination, decarboxylation to neurotransmitters (GABA, serotonin, dopamine, histamine), ALA synthase (first step of haem) and cystathionine β-synthase.
  • Deficiency from isoniazid (give pyridoxine prophylaxis), penicillamine, hydralazine, alcohol: peripheral neuropathy, seizures (low GABA; pyridoxine-dependent seizures in neonates), sideroblastic anaemia, glossitis.
  • Very high doses cause sensory neuropathy.

Folate (B9)

  • Green leafy vegetables, liver, pulses; destroyed by prolonged cooking; absorbed in the jejunum; stores last only about 3–4 months.
  • Folate is needed to make thymidine (dTMP), so without it DNA synthesis stalls while RNA and protein synthesis continue: large cells with immature nuclei (megaloblasts).
  • Causes: poor diet (elderly, alcohol), increased demand (pregnancy, haemolysis, malignancy), malabsorption (coeliac), and drugs: methotrexate and trimethoprim (dihydrofolate reductase inhibitors), phenytoin, sulfasalazine. Folate deficiency is the commonest cause of megaloblastic anaemia overall.
  • Neural tube defects: folic acid 400 µg daily from before conception to 12 weeks; 5 mg for high risk (previous NTD, antiepileptics, diabetes, BMI over 30, sickle cell).

Vitamin B12 (cobalamin)

  • Found only in animal foods, so strict vegans are at risk.
  • Absorption: acid and pepsin release B12 from food; it binds haptocorrin in the stomach; pancreatic proteases free it in the duodenum; it binds intrinsic factor from parietal cells; the complex is absorbed in the terminal ileum.
  • Causes: pernicious anaemia (autoimmune gastritis; anti-intrinsic factor and anti-parietal cell antibodies; raised gastric cancer risk), gastrectomy, terminal ileal resection or Crohn disease, the fish tapeworm *Diphyllobothrium latum*, bacterial overgrowth, metformin, long-term PPIs, nitrous oxide.
  • Methionine synthase uses B12 and methyl-THF; when it fails, folate is trapped as methyl-THF (the folate trap), so megaloblastic anaemia develops. Methylmalonyl-CoA mutase failure raises methylmalonic acid and disturbs myelin fatty acids.
  • Subacute combined degeneration: dorsal columns (lost vibration and position sense) and lateral corticospinal tracts (weakness, extensor plantars with absent ankle jerks), plus neuropathy, dementia, optic atrophy.
  • Folate given alone in B12 deficiency can correct the blood picture while neurological damage advances; give IM hydroxocobalamin first.
TestFolate deficiencyB12 deficiency
HomocysteineRaisedRaised
Methylmalonic acidNormalRaised
Neurological signsAbsentPresent
Stores last3–4 months3–5 years

Exam trap Both deficiencies raise homocysteine; only B12 deficiency raises methylmalonic acid.

Megaloblastic anaemia not due to B12 or folate

  • Hereditary orotic aciduria: defect of UMP synthase in pyrimidine synthesis; megaloblastic anaemia unresponsive to B12 and folate, orotic acid in urine, normal ammonia, poor growth. Treated with uridine, which bypasses the block.
  • Ornithine transcarbamylase deficiency also causes orotic aciduria, but with hyperammonaemia and no megaloblastic anaemia.
  • Drugs that block DNA synthesis (hydroxycarbamide, azathioprine, zidovudine) also cause macrocytosis.

Vitamin C (ascorbic acid)

  • Humans cannot make it (no gulonolactone oxidase).
  • Roles: hydroxylation of proline and lysine in collagen (keeps iron in prolyl hydroxylase in the Fe²⁺ state), dopamine β-hydroxylase (dopamine to noradrenaline), carnitine synthesis, iron absorption (reduces ferric to ferrous iron), antioxidant.
  • Scurvy: perifollicular haemorrhages, corkscrew hairs, swollen bleeding gums, poor wound healing, bruising, anaemia, subperiosteal bleeding; infants on boiled milk have painful legs. Seen in alcoholics and elderly people who eat no fruit or vegetables.
  • High doses increase oxalate stones.
  • Biotin deficiency is rare but occurs with excess raw egg white (avidin binds biotin).

How FCPS asks about this

  • Cofactor group of thiamine pyrophosphate: PDH, α-ketoglutarate dehydrogenase and transketolase; transketolase activity measures thiamine status.
  • Raw fish and polished rice with burning feet and oedema: thiamine deficiency; raw fish contains thiaminase.
  • Corneal vascularisation with angular stomatitis: riboflavin deficiency.
  • Dermatitis, diarrhoea, dementia: niacin deficiency; think carcinoid, Hartnup, isoniazid, maize.
  • Vitamin before conception to prevent neural tube defects: folic acid 400 µg (5 mg if high risk).
  • Megaloblastic anaemia with neurology and raised methylmalonic acid: B12 deficiency; folate alone worsens the neurology.
  • Megaloblastic anaemia unresponsive to B12 and folate with orotic aciduria and normal ammonia: hereditary orotic aciduria; treat with uridine.

Test yourself on this topic

5 of the 37 questions in our bank on this topic. Choose an answer to see why every option is right or wrong.

Question 1Medium

In maple syrup urine disease, which amino acids must be restricted in the diet?

Question 2Medium

A patient on isoniazid without pyridoxine develops a microcytic anaemia; bone marrow shows ring sideroblasts. What is the mechanism?

Question 3Medium

An elderly man living alone on tea and biscuits has bleeding swollen gums, bruising, corkscrew hairs and perifollicular haemorrhages on his legs. Which vitamin is deficient?

Question 4Medium

A woman on sodium valproate for epilepsy plans pregnancy. What folic acid dose is advised before conception and in early pregnancy?

Question 5Medium

A man with a metastatic small-bowel carcinoid tumour develops diarrhoea, flushing and later a photosensitive dermatitis. Which vitamin deficiency explains the dermatitis?

Practise all 37 questions on this topic

Where this sits in the CPSP syllabus

  • Paper 1: Nutrition, vitamins and minerals, Water-soluble vitamins: B group and C

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