FCPS Part 1 Pathology and microbiology

Gram-positive bacteria

Gram-positive bacteria for FCPS: staphylococci, streptococci, clostridia, Listeria

Gram-positive bacteria for FCPS Part 1: staphylococci, streptococci, enterococci, clostridia, diphtheria, Listeria, anthrax and Actinomyces. Learn how catalase, coagulase, haemolysis and Lancefield groups sort the cocci, then each organism's signature disease.

Sorting Gram-positive cocci

  • Catalase (bubbles with hydrogen peroxide): positive in staphylococci, negative in streptococci and enterococci.
  • Staphylococci: coagulase positive means *S. aureus*; coagulase-negative species are *S. epidermidis* (novobiocin sensitive) and *S. saprophyticus* (novobiocin resistant).
  • Streptococci are first sorted by haemolysis on blood agar, then beta-haemolytic ones by Lancefield grouping, which identifies the carbohydrate (C) antigen in the cell wall with specific antisera (groups A, B, C, D and so on).
HaemolysisOrganismDistinguishing test
Alpha (partial, green)*S. pneumoniae*Optochin sensitive, bile soluble, lancet diplococci, capsule (Quellung)
AlphaViridans streptococciOptochin resistant
Beta (complete, clear)Group A, *S. pyogenes*Bacitracin sensitive; PYR positive
BetaGroup B, *S. agalactiae*Bacitracin resistant, CAMP positive, hippurate hydrolysis
Gamma (none)Enterococci (group D)Grow in 6.5% NaCl and bile aesculin
Gamma*S. gallolyticus* (bovis)Bile aesculin positive, no growth in 6.5% salt
  • A sore throat swab showing complete (beta) haemolysis on sheep blood agar in a child is most likely group A streptococcus.

*Staphylococcus aureus*

  • Virulence: protein A (binds the Fc of IgG, blocking opsonisation), coagulase, haemolysins, Panton–Valentine leucocidin (necrotising pneumonia, recurrent boils), enterotoxins, TSST-1, exfoliatins.
  • Penicillin resistance: most strains make plasmid-coded beta-lactamase (penicillinase), so use flucloxacillin. MRSA carries *mecA*, coding the altered penicillin-binding protein PBP2a with low affinity for all beta-lactams; treat with vancomycin, teicoplanin, linezolid or daptomycin; decolonise with mupirocin and chlorhexidine.
  • Diseases: the commonest cause of surgical wound infection, boils, carbuncles, bullous impetigo, cellulitis, osteomyelitis and septic arthritis (commonest cause), lactational breast abscess, acute endocarditis (IV drug users, tricuspid valve), post-influenza pneumonia with abscesses, abscesses anywhere (think *S. aureus* first for a lung or brain abscess with meningitis), parotitis.
  • Toxin diseases: food poisoning (preformed heat-stable enterotoxin, vomiting at 1–6 hours; custards, dairy, cooked meat), toxic shock syndrome (tampons, nasal packs: fever, hypotension, rash then desquamation of palms), scalded skin syndrome (children; Nikolsky positive, mucosa spared).
  • *S. epidermidis* forms biofilm on prosthetic joints, valves, lines and shunts, so infection persists despite sensitive antibiotics; it is also the commonest blood culture contaminant. *S. saprophyticus* causes UTI in young sexually active women (second to *E. coli*).

*Streptococcus pyogenes* (group A)

  • Virulence: M protein (antiphagocytic; its antibodies cross-react with heart tissue), streptolysin O (gives the ASO titre), streptolysin S, hyaluronidase, streptokinase, DNase B, pyrogenic exotoxins (superantigens of scarlet fever and streptococcal toxic shock).
  • Suppurative disease: pharyngitis, impetigo (honey crusts), erysipelas (sharply raised edge), cellulitis, necrotising fasciitis (surgical emergency), puerperal sepsis.
  • Toxigenic: scarlet fever (sandpaper rash, strawberry tongue, circumoral pallor, peeling).
  • Non-suppurative sequelae:
FeatureAcute rheumatic feverPost-streptococcal GN
Preceding infectionPharyngitis onlyPharyngitis or skin
Latent period2–4 weeks1–3 weeks (skin 3–6)
MechanismMolecular mimicry (type II)Immune complexes (type III)
LabRaised ASOLow C3 (the most consistent finding); ASO after throat, anti-DNase B after skin
PreventionPenicillin for sore throat; benzathine penicillin prophylaxisTreating the infection does not reliably prevent it
  • Rheumatic carditis is a pancarditis; the typical new murmur is an apical pansystolic murmur of mitral regurgitation (sometimes with a soft mid-diastolic Carey Coombs murmur). Carditis with heart failure is the commonest cause of death in the acute attack; mitral stenosis comes years later. Recurrent streptococcal pharyngitis puts a child at risk of rheumatic fever.
  • Penicillin remains uniformly active against *S. pyogenes*.

Other streptococci and enterococci

  • Group B: early-onset neonatal sepsis, pneumonia and meningitis; intrapartum penicillin for colonised mothers. *E. coli* is the other leading cause of neonatal meningitis.
  • *S. pneumoniae*: commonest cause of community-acquired pneumonia, adult meningitis (including over 60), otitis media, sinusitis; danger in asplenia and sickle cell disease. Meningitis: ceftriaxone (plus vancomycin if resistance is possible). Vaccines: PCV and PPV23.
  • Viridans streptococci (*S. mutans*, *S. sanguinis*): dental caries; the commonest cause of subacute endocarditis on damaged valves (dextran helps them stick to fibrin–platelet vegetations). *S. anginosus* (milleri) group: brain and liver abscesses.
  • *S. gallolyticus* (bovis) endocarditis means colonoscopy to look for colorectal cancer.
  • Enterococci: UTI, biliary sepsis, endocarditis after urinary or bowel procedures; intrinsically resistant to cephalosporins; amoxicillin (with gentamicin for endocarditis); VRE needs linezolid or daptomycin.

Clostridia: anaerobic spore-formers

SpeciesDiseaseKey points
*C. tetani*TetanusSpores in soil enter deep wounds or the umbilical stump; tetanospasmin travels retrogradely to the cord and blocks release of glycine and GABA from inhibitory interneurons, so motor neurons fire unchecked: trismus, risus sardonicus, opisthotonos, spasms. Treat with debridement, human tetanus immunoglobulin, metronidazole, benzodiazepines, ICU. Recovery gives no immunity: vaccinate
*C. botulinum*BotulismToxin blocks acetylcholine release: descending symmetrical flaccid paralysis, diplopia, ptosis, dilated pupils, dysphagia, clear mind. Adults: preformed toxin in canned food. Infant botulism: spores in honey germinate in the gut (constipation, weak cry, floppy baby)
*C. perfringens*Gas gangrene; food poisoning from reheated meat (diarrhoea at 8–16 h)Alpha toxin (lecithinase, phospholipase C) destroys cell membranes (Nagler reaction); crepitus, bronze skin, pain out of proportion; urgent radical debridement, penicillin plus clindamycin
*C. difficile*Pseudomembranous colitisAfter clindamycin, cephalosporins, co-amoxiclav, quinolones, PPIs; toxins A and B (not alpha toxin); diagnose by GDH plus toxin test; oral vancomycin or fidaxomicin (oral metronidazole is now second-line); faecal transplant for recurrence; soap and water, sporicidal cleaning
  • Tetanus prophylaxis for a dirty wound: full primary course with the last dose over 10 years ago (or over 5 years for a heavily contaminated wound): toxoid booster plus wound care; unknown or incomplete course: toxoid plus tetanus immunoglobulin. Neonatal tetanus is prevented by vaccinating mothers.

*Corynebacterium diphtheriae*

  • Club-shaped rods in Chinese-letter arrangement with metachromatic (Babes–Ernst) granules; grows on Loeffler serum and tellurite (black colonies). The toxin gene comes from a beta-prophage (lysogenic conversion); the Elek test shows whether a strain makes toxin.
  • Toxin ADP-ribosylates EF-2: grey adherent pseudomembrane that bleeds when removed, bull neck, airway obstruction, myocarditis (main cause of death), palatal and cranial nerve palsies.
  • Give antitoxin at once on clinical suspicion (it cannot reach toxin already inside cells), plus penicillin or erythromycin; isolate; immunise contacts.

*Listeria monocytogenes*

  • Small Gram-positive rod; tumbling motility at 25 °C; grows at fridge temperature; intracellular, spreading cell to cell by actin rockets.
  • Sources: soft cheese, unpasteurised milk, deli meat. Disease: sepsis in pregnancy (miscarriage, stillbirth), neonatal sepsis and meningitis, meningitis in the elderly and immunosuppressed.
  • Amoxicillin or ampicillin (with gentamicin); cephalosporins do not cover it.

*Bacillus*

  • *B. anthracis*: large boxcar rods, spore-forming, non-motile, "medusa head" colonies. Its capsule is poly-D-glutamic acid (protein), not polysaccharide; with polychrome methylene blue the blue rods sit in purple-pink capsular material (McFadyean reaction). Cutaneous anthrax (wool sorters, hide and livestock handlers): painless black eschar with oedema. Inhalational anthrax: haemorrhagic mediastinitis, widened mediastinum. Treat with ciprofloxacin or doxycycline.
  • *B. cereus*: reheated fried rice; emetic type (preformed toxin, 1–6 hours) or diarrhoeal type (8–16 hours).

Branching Gram-positives and others

  • *Actinomyces israelii*: anaerobic branching filaments, sulphur granules; cervicofacial "lumpy jaw" with sinuses after dental work, abdominal, pelvic with a long-standing IUCD; long-course penicillin plus drainage.
  • *Nocardia*: aerobic, branching, weakly acid-fast; lung and brain abscess in the immunosuppressed; co-trimoxazole.
  • *Cutibacterium acnes*: acne, shunt and prosthetic joint infections.
  • Rat-bite fever (fever, migratory polyarthritis, rash after a rat bite): *Streptobacillus moniliformis* in the West, *Spirillum minus* in Asia; both are Gram-negative, treated with penicillin.

Remember Catalase splits staphylococci from streptococci; coagulase marks *S. aureus*; haemolysis and Lancefield groups sort the streptococci.

Exam trap Listeria and enterococci resist cephalosporins; add amoxicillin.

Exam trap Tetanus gives spastic paralysis (loss of inhibition); botulism gives flaccid paralysis (no acetylcholine release).

How FCPS asks about this

  • Grouping streptococci: Lancefield, by cell-wall carbohydrate antigen; group A is bacitracin sensitive, pneumococcus optochin sensitive.
  • Staphylococcal penicillin resistance: beta-lactamase; MRSA through mecA and PBP2a; biofilm explains persistent prosthetic infection.
  • Commonest causes: *S. aureus* for osteomyelitis, wound infection and lactational mastitis; viridans streptococci for subacute endocarditis.
  • Rheumatic fever: pharyngitis only; apical pansystolic murmur; death from carditis; PSGN shows low C3 and follows throat or skin infection.
  • Clostridia: tetanus blocks glycine and GABA release; infant botulism from honey; *C. perfringens* lecithinase; *C. difficile* treated with oral vancomycin.
  • Anthrax: painless black eschar in wool sorters; McFadyean reaction shows a protein capsule; ciprofloxacin.
  • Diphtheria: EF-2 toxin, pseudomembrane, myocarditis; Elek test; antitoxin first.

Test yourself on this topic

5 of the 56 questions in our bank on this topic. Choose an answer to see why every option is right or wrong.

Question 1Medium

A patient's infected prosthetic hip grows coagulase-negative staphylococci that persist despite appropriate antibiotics. What bacterial feature explains this?

Question 2Medium

Pus from a finger infection grows Staphylococcus aureus. Which surface protein helps it escape phagocytosis by binding the Fc part of IgG?

Question 3Medium

Acute rheumatic fever after streptococcal pharyngitis damages the heart through which mechanism?

Question 4Hard

Newborns are especially vulnerable to invasive group B streptococcal disease when the mother has low levels of type-specific antibody. Which bacterial component is the main virulence factor, and the target of that protective antibody?

Question 5Hard

A 40-year-old man who sorts imported raw wool in a factory has 3 days of fever and muscle aches, then sudden severe breathlessness and shock. His chest radiograph shows a widened mediastinum and bilateral pleural effusions, with little lung consolidation. What is the diagnosis?

Practise all 56 questions on this topic

Where this sits in the CPSP syllabus

  • Paper 1: Microbiology, Gram-positive bacteria: staphylococci, streptococci, clostridia, corynebacteria, Listeria, Bacillus

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