Antibacterial drugs
Antibacterial Drugs: Mechanisms, Resistance, Toxicity, Surgical Prophylaxis (FCPS Part 1)
Antibiotic targets, spectra, resistance, toxicities and surgical prophylaxis for FCPS Part 1, explained by mechanism. Covers β-lactams and growth phase, aminoglycoside levels, grey baby syndrome, ESBL, VRE, MRSA, prophylaxis timing and tetanus and splenectomy rules.
One of the most tested topics in past papers
Why antibiotics spare human cells
Selective toxicity depends on targets that humans lack or that differ: the peptidoglycan cell wall, 70S ribosomes (30S plus 50S; humans have 80S), bacterial DNA gyrase, and folate synthesis (humans take folate from food). Mitochondrial ribosomes resemble bacterial ones, which explains some toxicity (aminoglycoside ototoxicity, linezolid and chloramphenicol marrow effects).
| Target | Drugs |
|---|---|
| Cell wall | β-lactams bind penicillin-binding proteins (transpeptidases); vancomycin binds D-Ala-D-Ala of wall precursors |
| Cell membrane | Polymyxins (colistin), daptomycin |
| 30S ribosome | Aminoglycosides (misreading, bactericidal), tetracyclines (block aminoacyl-tRNA binding, bacteriostatic) |
| 50S ribosome | Macrolides (block translocation), clindamycin, chloramphenicol (peptidyl transferase), linezolid |
| DNA gyrase, topoisomerase IV | Fluoroquinolones |
| RNA polymerase | Rifampicin |
| DNA damage | Metronidazole, nitrofurantoin |
| Folate synthesis | Sulphonamides (dihydropteroate synthase), trimethoprim (dihydrofolate reductase) |
Growth phase, killing pattern and combinations
- β-lactams kill by blocking cell wall building during growth: walls weakened while the cell enlarges burst osmotically. They are most effective in the logarithmic (exponential) phase and poorly active against dormant cells.
- Adding a bacteriostatic drug (tetracycline) to penicillin in pneumococcal meningitis is a poor combination: stopping growth blunts penicillin's killing; the bacteriostatic-plus-penicillin arm had higher mortality.
- Concentration-dependent killing (aminoglycosides, quinolones): high peaks, once-daily dosing, post-antibiotic effect. Time-dependent (β-lactams, vancomycin): time above MIC matters.
- Jarisch–Herxheimer reaction: fever, rigors, headache and a worse rash hours after the first dose of penicillin for syphilis (or other spirochaetes), from cytokines released as organisms die. Continue treatment; give antipyretics.
Classes, spectra and toxicities
| Drug | Use | Key toxicity |
|---|---|---|
| Benzylpenicillin | Streptococci, meningococcus (meningitis with rash), syphilis, clostridia | Hypersensitivity |
| Flucloxacillin | *S. aureus* | Cholestatic jaundice |
| Amoxicillin, co-amoxiclav | Broader; clavulanate inhibits β-lactamase | Rash in glandular fever; *C. difficile* |
| Piperacillin–tazobactam | *Pseudomonas* (the antipseudomonal penicillin) | Hypokalaemia |
| Cephalosporins | 1st (cefazolin, cefalexin): Gram-positive, staphylococci; 3rd (ceftriaxone: meningitis, gonorrhoea, enteric fever; ceftazidime: *Pseudomonas*); 4th (cefepime): best antipseudomonal cover with Gram-positive activity; 5th (ceftaroline): MRSA | No activity against enterococci or *Listeria*; ceftriaxone binds calcium and precipitates in bile (pseudolithiasis), which clears on stopping |
| Carbapenems | ESBL producers | Seizures (imipenem) |
| Vancomycin | MRSA; oral for *C. difficile* | Nephrotoxicity, ototoxicity, red man syndrome (rate-related histamine release; slow the infusion) |
| Aminoglycosides (gentamicin, amikacin, streptomycin) | Aerobic Gram-negatives; inactive against anaerobes (oxygen-dependent uptake) | Nephrotoxicity and ototoxicity, neuromuscular block; teratogenic (streptomycin: fetal deafness) |
| Macrolides | Atypicals, *Campylobacter*, pertussis, penicillin allergy | QT, CYP3A4 inhibition (clarithromycin, erythromycin; not azithromycin), GI upset, cholestasis |
| Tetracyclines | Atypicals, rickettsia, *Chlamydia*, cholera, brucella, acne | Teeth and bone (avoid under 12 and in pregnancy), photosensitivity; chelated by calcium, iron and antacids |
| Fluoroquinolones | Gram-negatives, *Pseudomonas* (ciprofloxacin) | Tendon rupture, QT, seizures, aortic aneurysm, CYP1A2 inhibition |
| Clindamycin | Anaerobes, staphylococci, toxin suppression | Highest *C. difficile* risk |
| Metronidazole | Anaerobes, *C. difficile*, protozoa | Blocks aldehyde dehydrogenase: acetaldehyde accumulates with alcohol (flushing, vomiting, palpitations); neuropathy; raises INR |
| Co-trimoxazole | *Pneumocystis*, UTI | Hyperkalaemia, marrow, SJS |
| Nitrofurantoin | Lower UTI | Pulmonary fibrosis, neuropathy |
| Chloramphenicol | Meningitis, typhoid, eye drops | Aplastic anaemia; grey baby syndrome |
| Linezolid | MRSA, VRE | Thrombocytopenia, serotonin syndrome |
- Grey baby syndrome: premature neonates have immature glucuronyl transferase and poor renal excretion, so chloramphenicol accumulates and poisons mitochondria: floppy, ashen, cyanosed, hypotensive.
- Sulphonamides near term and in newborns displace bilirubin from albumin; free bilirubin crosses the immature BBB and causes kernicterus. Ceftriaxone does the same.
- Gentamicin monitoring: the trough (pre-dose) level reflects accumulation between doses, which drives kidney and ear toxicity. A high trough means the drug is not being cleared: extend the dosing interval (do not just lower the dose). Gentamicin is hydrophilic: in obese patients it distributes poorly into fat, so dose by adjusted body weight; in the elderly, reduced renal excretion is the main issue. Avoid in CKD and myasthenia.
- In renal failure, macrolides such as azithromycin and doxycycline need no adjustment.
- Enterohepatic circulation: some drugs (oestrogens, mycophenolate) are conjugated in the liver, excreted in bile, deconjugated by gut bacteria and reabsorbed. Broad-spectrum antibiotics kill those bacteria and reduce recirculation, lowering levels.
- Long courses of antibiotics with poor diet or TPN kill vitamin K-producing gut flora: bruising with prolonged PT and normal platelets. Antibiotic-associated diarrhoea with fever suggests C. difficile pseudomembranous colitis.
Resistance mechanisms
| Mechanism | Example |
|---|---|
| β-lactamase | ESBL-producing *Klebsiella* or *E. coli* hydrolyse third-generation cephalosporins such as ceftriaxone: use a carbapenem. Carbapenemases (KPC, NDM-1) follow carbapenem overuse |
| Altered target | MRSA: *mecA* encodes PBP2a with low β-lactam affinity (vancomycin still works). VRE: wall precursors end in D-Ala-D-Lac, which vancomycin cannot bind. Macrolides: *erm* methylation. Rifampicin: *rpoB* |
| Reduced entry and efflux | Porin loss, efflux pumps (tetracyclines, quinolones) |
| Drug-modifying enzymes | Aminoglycoside acetylation, chloramphenicol acetyltransferase |
- Genes spread by plasmids (conjugation), transposons, transformation and transduction. Stewardship: right drug, dose and duration; review at 48–72 hours. Uncomplicated community pneumonia (CURB-65 0–1) needs 5 days of amoxicillin.
- Penicillin "allergy" labels: a mild delayed itchy rash in childhood is a non-severe reaction, so a cephalosporin is reasonable; only immediate anaphylaxis, angioedema or severe skin reactions exclude β-lactams. Wrong labels push patients onto broader drugs.
Surgical prophylaxis
- Indicated for clean-contaminated and contaminated surgery, and clean surgery with implants or where infection would be catastrophic. Dirty wounds need treatment. Elective laparoscopic cholecystectomy in a low-risk patient does not routinely need prophylaxis.
- Timing: IV within 60 minutes before incision, at induction. Vancomycin must be infused slowly (red man syndrome), so it is started 60–120 minutes before incision.
- Redose if surgery lasts beyond two half-lives or blood loss exceeds 1.5 L; do not continue beyond 24 hours.
- Cefazolin (first generation) for clean orthopaedic surgery: better antistaphylococcal activity and less resistance selection than a third-generation drug. Add metronidazole for colorectal surgery; teicoplanin or vancomycin plus gentamicin for MRSA or penicillin allergy.
- Do not shave with a razor the night before: microscopic cuts let bacteria colonise the skin. Clip just before surgery if needed.
- Endocarditis prophylaxis for dental extraction is not routine even with a prosthetic valve under UK-style guidance; follow cardiology advice; oral hygiene matters more.
| Wound class | Example | Infection rate |
|---|---|---|
| Clean | Hernia, thyroid | Under 2% |
| Clean-contaminated | Elective bowel, cholecystectomy | Under 10% |
| Contaminated | Spillage, fresh trauma | 15–20% |
| Dirty | Pus, perforation | Over 30% |
Source control, tetanus and splenectomy
- Pus needs drainage: an abscess (after checking that a groin swelling in a drug user is not pulsatile) needs incision and drainage; a pelvic collection after perforated appendicitis needs image-guided drainage with antibiotics.
- In a diabetic foot, culture deep tissue or bone taken at surgery, not surface swabs.
- Tetanus: a clean minor wound with a full primary course and a booster within 10 years needs nothing. A tetanus-prone wound in an unvaccinated person needs vaccine plus tetanus immunoglobulin; tetanus does not leave immunity.
- After splenectomy: pneumococcal, Hib, meningococcal and annual influenza vaccines (2 weeks before elective or 2 weeks after emergency surgery) and long-term penicillin prophylaxis.
Exam trap A high gentamicin trough means extend the interval; a high peak means lower the dose.
Drugs from other anti-infective chapters tested here
| Question | Answer |
|---|---|
| H. pylori first line | PPI plus two antibiotics |
| Second-line TB drug with QT warning | Bedaquiline |
| Second-line TB drug causing depression and seizures | Cycloserine |
| TB drug avoided in pregnancy (fetal deafness) | Streptomycin |
| Chronic hepatitis B long-term treatment | Tenofovir or entecavir |
| Antiretroviral causing painful neuropathy and pancreatitis | Didanosine |
| Antimalarial with highest QT risk | Halofantrine |
| Vivax relapse after chloroquine | Add primaquine after checking G6PD |
| Warfarin with metronidazole | INR rises |
Remember β-lactams need growing bacteria; give them alone, early and at the right time.
How FCPS asks about this
- Why β-lactams work best in log phase: they block wall building during growth.
- Grey baby syndrome: immature glucuronidation of chloramphenicol.
- Sulphonamides near term: displace bilirubin from albumin (kernicterus).
- Vancomycin and VRE: binds D-Ala-D-Ala; VRE makes D-Ala-D-Lac.
- ESBL Klebsiella failing ceftriaxone: enzyme hydrolyses cephalosporins; use a carbapenem.
- Clarithromycin mechanism: blocks translocation at the 50S subunit.
- Prophylaxis timing: within 60 minutes before incision; vancomycin 60–120 minutes before.
Test yourself on this topic
5 of the 160 questions in our bank on this topic. Choose an answer to see why every option is right or wrong.
Which antibiotic is most strongly associated with Clostridioides difficile infection?
Answer: Clindamycin
Clindamycin has the highest association with C. difficile, followed by cephalosporins (especially third-generation), co-amoxiclav and fluoroquinolones. These broad agents disrupt normal colonic flora, allowing spores to germinate and toxin-producing C. difficile to overgrow. Doxycycline, nitrofurantoin, gentamicin and trimethoprim carry lower risk.
C. difficile risk
- Highest: clindamycin
- Also: cephalosporins, co-amoxiclav, quinolones
- Plus PPIs, age, hospital stay
Remember The 4 Cs: clindamycin, cephalosporins, co-amoxiclav, ciprofloxacin.
Exam trap PPIs also raise C. difficile risk.
Why the other options are wrong
- Doxycycline Lower risk.
- Nitrofurantoin Lower risk.
- Gentamicin Lower risk.
- Trimethoprim Lower risk.
A 6-year-old in Karachi has had 10 days of fever and now has abdominal pain, distension and falling blood pressure. Blood culture grows Salmonella Typhi resistant to ampicillin, chloramphenicol, co-trimoxazole, ciprofloxacin and ceftriaxone, from an ESBL gene. Which of the following IV antibiotics is most appropriate?
Answer: Meropenem
Extensively drug-resistant (XDR) typhoid, first reported in Sindh in 2016, is resistant to first-line drugs, fluoroquinolones and third-generation cephalosporins. Its ceftriaxone resistance comes from an extended-spectrum β-lactamase, which hydrolyses cephalosporins but not carbapenems. Uncomplicated XDR typhoid can be treated with oral azithromycin, but a child with suspected complications and shock needs IV meropenem, often with azithromycin. Gentamicin does not reach intracellular Salmonella well.
XDR typhoid
- Resistant to first-line drugs, quinolones, ceftriaxone
- Ceftriaxone resistance from ESBL
- Uncomplicated: oral azithromycin
- Complicated: IV meropenem
Remember ESBL beats cephalosporins, not carbapenems.
Exam trap Overuse of carbapenems in typhoid drives carbapenem resistance; reserve them for complicated or severe cases.
Why the other options are wrong
- High-dose ceftriaxone ESBL hydrolyses ceftriaxone whatever the dose.
- Ciprofloxacin The strain is fluoroquinolone resistant.
- Gentamicin Poor intracellular action; not effective for typhoid.
- Chloramphenicol The strain is resistant to chloramphenicol.
During which phase of bacterial growth are β-lactam antibiotics most effective?
Answer: Logarithmic phase
In a batch culture bacteria go through: lag phase (adaptation, no division), log phase (exponential division; cell wall synthesis is maximal), stationary phase (nutrients depleted, growth equals death; spores and exotoxins often formed), and decline phase. Antibiotics acting on cell wall synthesis (β-lactams, vancomycin) kill actively dividing cells best, so are most effective in log phase. Bacteriostatic drugs (tetracyclines, macrolides) can antagonise β-lactams by halting growth.
Bacterial growth curve
- Lag: adapting
- Log: dividing → β-lactams work best
- Stationary: spores, exotoxins
- Decline: death
Remember Hit the wall while it is being built.
Why the other options are wrong
- Lag phase No division yet.
- Stationary phase Little division.
- Decline phase Cells already dying.
- Spore phase Spores resist antibiotics.
In a trachoma control programme in a rural district, children are given a single oral dose of azithromycin once a year. Which of the following properties makes one dose effective?
Answer: Long half-life with high tissue levels
Azithromycin is taken up and concentrated inside cells, including phagocytes, which carry it to infected tissues. Tissue levels far exceed plasma levels, and the drug is released slowly, giving a terminal half-life of about 2–3 days. A single dose therefore keeps effective levels at the site of Chlamydia trachomatis infection for days. It is cleared mainly in bile, not by the kidney.
Azithromycin
- Concentrated in cells and tissues
- Half-life about 2–3 days
- Single dose for trachoma, some STIs
- Cleared mainly in bile
Remember Azithromycin hides in tissues and leaks out slowly.
Exam trap Azithromycin, like other macrolides, can prolong the QT interval.
Why the other options are wrong
- Bactericidal action at the 30S subunit Macrolides act on the 50S subunit and are mainly bacteriostatic.
- Stability against β-lactamase enzymes β-lactamase stability is irrelevant; it is not a β-lactam.
- Slow renal excretion of unchanged drug It is cleared mainly in bile, not the urine.
- Depot formation in the conjunctiva It does not form a local depot; levels are high in many tissues.
An ICU patient with Pseudomonas pneumonia receives piperacillin–tazobactam as a 4-hour infusion rather than over 30 minutes. What is the basis for this?
Answer: Killing depends on time above the MIC
β-lactams show time-dependent killing: their effect depends on the percentage of the dosing interval during which the free drug level stays above the minimum inhibitory concentration (MIC). Higher peaks add little. Extended or continuous infusions keep levels above the MIC for longer, which helps against organisms with high MICs such as Pseudomonas. Aminoglycosides are the opposite: their killing depends on the peak, and they have a long post-antibiotic effect.
Killing patterns
- β-lactams: time above MIC
- Extended or continuous infusion
- Aminoglycosides: peak/MIC
- Aminoglycosides: long post-antibiotic effect
Remember β-lactams want time; gentamicin wants height.
Exam trap Do not lengthen the dosing interval of a β-lactam the way you would for gentamicin.
Why the other options are wrong
- Killing depends on the peak concentration That is aminoglycosides and fluoroquinolones.
- It avoids nephrotoxicity from high peaks Piperacillin is not significantly nephrotoxic at peaks.
- It prevents breakdown of tazobactam Tazobactam stability does not depend on infusion time.
- It gives a long post-antibiotic effect β-lactams have little post-antibiotic effect on Gram-negatives.
Where this sits in the CPSP syllabus
- Paper 1: Chemotherapy, Antibacterials: mechanisms, spectra, resistance and toxicities
- Surgery & Allied, Paper 2: Drugs in surgical practice, Antibiotics and surgical prophylaxis
- Medicine & Allied, Paper 2: Antimicrobials, Antibacterials
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