FCPS Part 1 PharmacologyMedicine Paper 2Surgery Paper 2

Antibacterial drugs

Antibacterial Drugs: Mechanisms, Resistance, Toxicity, Surgical Prophylaxis (FCPS Part 1)

Antibiotic targets, spectra, resistance, toxicities and surgical prophylaxis for FCPS Part 1, explained by mechanism. Covers β-lactams and growth phase, aminoglycoside levels, grey baby syndrome, ESBL, VRE, MRSA, prophylaxis timing and tetanus and splenectomy rules.

One of the most tested topics in past papers

Why antibiotics spare human cells

Selective toxicity depends on targets that humans lack or that differ: the peptidoglycan cell wall, 70S ribosomes (30S plus 50S; humans have 80S), bacterial DNA gyrase, and folate synthesis (humans take folate from food). Mitochondrial ribosomes resemble bacterial ones, which explains some toxicity (aminoglycoside ototoxicity, linezolid and chloramphenicol marrow effects).

TargetDrugs
Cell wallβ-lactams bind penicillin-binding proteins (transpeptidases); vancomycin binds D-Ala-D-Ala of wall precursors
Cell membranePolymyxins (colistin), daptomycin
30S ribosomeAminoglycosides (misreading, bactericidal), tetracyclines (block aminoacyl-tRNA binding, bacteriostatic)
50S ribosomeMacrolides (block translocation), clindamycin, chloramphenicol (peptidyl transferase), linezolid
DNA gyrase, topoisomerase IVFluoroquinolones
RNA polymeraseRifampicin
DNA damageMetronidazole, nitrofurantoin
Folate synthesisSulphonamides (dihydropteroate synthase), trimethoprim (dihydrofolate reductase)

Growth phase, killing pattern and combinations

  • β-lactams kill by blocking cell wall building during growth: walls weakened while the cell enlarges burst osmotically. They are most effective in the logarithmic (exponential) phase and poorly active against dormant cells.
  • Adding a bacteriostatic drug (tetracycline) to penicillin in pneumococcal meningitis is a poor combination: stopping growth blunts penicillin's killing; the bacteriostatic-plus-penicillin arm had higher mortality.
  • Concentration-dependent killing (aminoglycosides, quinolones): high peaks, once-daily dosing, post-antibiotic effect. Time-dependent (β-lactams, vancomycin): time above MIC matters.
  • Jarisch–Herxheimer reaction: fever, rigors, headache and a worse rash hours after the first dose of penicillin for syphilis (or other spirochaetes), from cytokines released as organisms die. Continue treatment; give antipyretics.

Classes, spectra and toxicities

DrugUseKey toxicity
BenzylpenicillinStreptococci, meningococcus (meningitis with rash), syphilis, clostridiaHypersensitivity
Flucloxacillin*S. aureus*Cholestatic jaundice
Amoxicillin, co-amoxiclavBroader; clavulanate inhibits β-lactamaseRash in glandular fever; *C. difficile*
Piperacillin–tazobactam*Pseudomonas* (the antipseudomonal penicillin)Hypokalaemia
Cephalosporins1st (cefazolin, cefalexin): Gram-positive, staphylococci; 3rd (ceftriaxone: meningitis, gonorrhoea, enteric fever; ceftazidime: *Pseudomonas*); 4th (cefepime): best antipseudomonal cover with Gram-positive activity; 5th (ceftaroline): MRSANo activity against enterococci or *Listeria*; ceftriaxone binds calcium and precipitates in bile (pseudolithiasis), which clears on stopping
CarbapenemsESBL producersSeizures (imipenem)
VancomycinMRSA; oral for *C. difficile*Nephrotoxicity, ototoxicity, red man syndrome (rate-related histamine release; slow the infusion)
Aminoglycosides (gentamicin, amikacin, streptomycin)Aerobic Gram-negatives; inactive against anaerobes (oxygen-dependent uptake)Nephrotoxicity and ototoxicity, neuromuscular block; teratogenic (streptomycin: fetal deafness)
MacrolidesAtypicals, *Campylobacter*, pertussis, penicillin allergyQT, CYP3A4 inhibition (clarithromycin, erythromycin; not azithromycin), GI upset, cholestasis
TetracyclinesAtypicals, rickettsia, *Chlamydia*, cholera, brucella, acneTeeth and bone (avoid under 12 and in pregnancy), photosensitivity; chelated by calcium, iron and antacids
FluoroquinolonesGram-negatives, *Pseudomonas* (ciprofloxacin)Tendon rupture, QT, seizures, aortic aneurysm, CYP1A2 inhibition
ClindamycinAnaerobes, staphylococci, toxin suppressionHighest *C. difficile* risk
MetronidazoleAnaerobes, *C. difficile*, protozoaBlocks aldehyde dehydrogenase: acetaldehyde accumulates with alcohol (flushing, vomiting, palpitations); neuropathy; raises INR
Co-trimoxazole*Pneumocystis*, UTIHyperkalaemia, marrow, SJS
NitrofurantoinLower UTIPulmonary fibrosis, neuropathy
ChloramphenicolMeningitis, typhoid, eye dropsAplastic anaemia; grey baby syndrome
LinezolidMRSA, VREThrombocytopenia, serotonin syndrome
  • Grey baby syndrome: premature neonates have immature glucuronyl transferase and poor renal excretion, so chloramphenicol accumulates and poisons mitochondria: floppy, ashen, cyanosed, hypotensive.
  • Sulphonamides near term and in newborns displace bilirubin from albumin; free bilirubin crosses the immature BBB and causes kernicterus. Ceftriaxone does the same.
  • Gentamicin monitoring: the trough (pre-dose) level reflects accumulation between doses, which drives kidney and ear toxicity. A high trough means the drug is not being cleared: extend the dosing interval (do not just lower the dose). Gentamicin is hydrophilic: in obese patients it distributes poorly into fat, so dose by adjusted body weight; in the elderly, reduced renal excretion is the main issue. Avoid in CKD and myasthenia.
  • In renal failure, macrolides such as azithromycin and doxycycline need no adjustment.
  • Enterohepatic circulation: some drugs (oestrogens, mycophenolate) are conjugated in the liver, excreted in bile, deconjugated by gut bacteria and reabsorbed. Broad-spectrum antibiotics kill those bacteria and reduce recirculation, lowering levels.
  • Long courses of antibiotics with poor diet or TPN kill vitamin K-producing gut flora: bruising with prolonged PT and normal platelets. Antibiotic-associated diarrhoea with fever suggests C. difficile pseudomembranous colitis.

Resistance mechanisms

MechanismExample
β-lactamaseESBL-producing *Klebsiella* or *E. coli* hydrolyse third-generation cephalosporins such as ceftriaxone: use a carbapenem. Carbapenemases (KPC, NDM-1) follow carbapenem overuse
Altered targetMRSA: *mecA* encodes PBP2a with low β-lactam affinity (vancomycin still works). VRE: wall precursors end in D-Ala-D-Lac, which vancomycin cannot bind. Macrolides: *erm* methylation. Rifampicin: *rpoB*
Reduced entry and effluxPorin loss, efflux pumps (tetracyclines, quinolones)
Drug-modifying enzymesAminoglycoside acetylation, chloramphenicol acetyltransferase
  • Genes spread by plasmids (conjugation), transposons, transformation and transduction. Stewardship: right drug, dose and duration; review at 48–72 hours. Uncomplicated community pneumonia (CURB-65 0–1) needs 5 days of amoxicillin.
  • Penicillin "allergy" labels: a mild delayed itchy rash in childhood is a non-severe reaction, so a cephalosporin is reasonable; only immediate anaphylaxis, angioedema or severe skin reactions exclude β-lactams. Wrong labels push patients onto broader drugs.

Surgical prophylaxis

  • Indicated for clean-contaminated and contaminated surgery, and clean surgery with implants or where infection would be catastrophic. Dirty wounds need treatment. Elective laparoscopic cholecystectomy in a low-risk patient does not routinely need prophylaxis.
  • Timing: IV within 60 minutes before incision, at induction. Vancomycin must be infused slowly (red man syndrome), so it is started 60–120 minutes before incision.
  • Redose if surgery lasts beyond two half-lives or blood loss exceeds 1.5 L; do not continue beyond 24 hours.
  • Cefazolin (first generation) for clean orthopaedic surgery: better antistaphylococcal activity and less resistance selection than a third-generation drug. Add metronidazole for colorectal surgery; teicoplanin or vancomycin plus gentamicin for MRSA or penicillin allergy.
  • Do not shave with a razor the night before: microscopic cuts let bacteria colonise the skin. Clip just before surgery if needed.
  • Endocarditis prophylaxis for dental extraction is not routine even with a prosthetic valve under UK-style guidance; follow cardiology advice; oral hygiene matters more.
Wound classExampleInfection rate
CleanHernia, thyroidUnder 2%
Clean-contaminatedElective bowel, cholecystectomyUnder 10%
ContaminatedSpillage, fresh trauma15–20%
DirtyPus, perforationOver 30%

Source control, tetanus and splenectomy

  • Pus needs drainage: an abscess (after checking that a groin swelling in a drug user is not pulsatile) needs incision and drainage; a pelvic collection after perforated appendicitis needs image-guided drainage with antibiotics.
  • In a diabetic foot, culture deep tissue or bone taken at surgery, not surface swabs.
  • Tetanus: a clean minor wound with a full primary course and a booster within 10 years needs nothing. A tetanus-prone wound in an unvaccinated person needs vaccine plus tetanus immunoglobulin; tetanus does not leave immunity.
  • After splenectomy: pneumococcal, Hib, meningococcal and annual influenza vaccines (2 weeks before elective or 2 weeks after emergency surgery) and long-term penicillin prophylaxis.

Exam trap A high gentamicin trough means extend the interval; a high peak means lower the dose.

Drugs from other anti-infective chapters tested here

QuestionAnswer
H. pylori first linePPI plus two antibiotics
Second-line TB drug with QT warningBedaquiline
Second-line TB drug causing depression and seizuresCycloserine
TB drug avoided in pregnancy (fetal deafness)Streptomycin
Chronic hepatitis B long-term treatmentTenofovir or entecavir
Antiretroviral causing painful neuropathy and pancreatitisDidanosine
Antimalarial with highest QT riskHalofantrine
Vivax relapse after chloroquineAdd primaquine after checking G6PD
Warfarin with metronidazoleINR rises

Remember β-lactams need growing bacteria; give them alone, early and at the right time.

How FCPS asks about this

  • Why β-lactams work best in log phase: they block wall building during growth.
  • Grey baby syndrome: immature glucuronidation of chloramphenicol.
  • Sulphonamides near term: displace bilirubin from albumin (kernicterus).
  • Vancomycin and VRE: binds D-Ala-D-Ala; VRE makes D-Ala-D-Lac.
  • ESBL Klebsiella failing ceftriaxone: enzyme hydrolyses cephalosporins; use a carbapenem.
  • Clarithromycin mechanism: blocks translocation at the 50S subunit.
  • Prophylaxis timing: within 60 minutes before incision; vancomycin 60–120 minutes before.

Test yourself on this topic

5 of the 160 questions in our bank on this topic. Choose an answer to see why every option is right or wrong.

Question 1Easy

Which antibiotic is most strongly associated with Clostridioides difficile infection?

Question 2Medium

A 6-year-old in Karachi has had 10 days of fever and now has abdominal pain, distension and falling blood pressure. Blood culture grows Salmonella Typhi resistant to ampicillin, chloramphenicol, co-trimoxazole, ciprofloxacin and ceftriaxone, from an ESBL gene. Which of the following IV antibiotics is most appropriate?

Question 3Medium

During which phase of bacterial growth are β-lactam antibiotics most effective?

Question 4Medium

In a trachoma control programme in a rural district, children are given a single oral dose of azithromycin once a year. Which of the following properties makes one dose effective?

Question 5Hard

An ICU patient with Pseudomonas pneumonia receives piperacillin–tazobactam as a 4-hour infusion rather than over 30 minutes. What is the basis for this?

Practise all 160 questions on this topic

Where this sits in the CPSP syllabus

  • Paper 1: Chemotherapy, Antibacterials: mechanisms, spectra, resistance and toxicities
  • Surgery & Allied, Paper 2: Drugs in surgical practice, Antibiotics and surgical prophylaxis
  • Medicine & Allied, Paper 2: Antimicrobials, Antibacterials

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