FCPS Part 1 Biochemistry

Inborn errors of metabolism

Lysosomal Storage, Glycogen Storage and Inborn Errors of Metabolism

Lysosomal and glycogen storage diseases, PKU, alkaptonuria, maple syrup urine disease, galactosaemia and fructose disorders, plus gout and Wilson disease. Each is taught from the blocked enzyme, so the build-up and symptoms follow logically.

The logic of inborn errors

  • An inherited enzyme defect causes harm in two ways: the substrate before the block accumulates (often toxic), and the product after the block is missing. Most are autosomal recessive because one working copy usually gives enough enzyme.
  • Treatment follows the same logic: restrict the substrate, supply the missing product, give a cofactor, or replace the enzyme.

Lysosomes and storage disease

  • Lysosomes hold about 50 acid hydrolases working at pH about 5 (kept acid by proton pumps). They digest material arriving by endocytosis, phagocytosis and autophagy; autophagy explains regression of the uterus and breast after pregnancy.
  • Enzymes are tagged with mannose-6-phosphate in the Golgi. In I-cell disease (mucolipidosis II) the phosphotransferase fails, so enzymes are secreted into blood instead of reaching lysosomes: coarse facies, gingival hyperplasia, restricted joints, early death.
  • Storage material swells cells (foam cells, Gaucher cells) and enlarges organs. Inheritance is autosomal recessive except Fabry and Hunter (X-linked recessive).

Sphingolipidoses

DiseaseEnzyme deficientStoredKey features
Tay–SachsHexosaminidase AGM2 gangliosideCherry-red spot, neurodegeneration, exaggerated startle, no hepatosplenomegaly; onion-skin lysosomes; Ashkenazi Jews
Niemann–Pick A/BSphingomyelinaseSphingomyelinCherry-red spot with hepatosplenomegaly, foam cells
Gaucher (commonest)Glucocerebrosidase (β-glucosidase)GlucocerebrosideHepatosplenomegaly, pancytopenia, bone crises, femoral head avascular necrosis, Erlenmeyer flask femur; crumpled tissue-paper macrophages; enzyme replacement
Fabryα-galactosidase ACeramide trihexoside (Gb3)X-linked; burning pain in hands and feet, angiokeratomas, hypohidrosis, corneal opacity, renal failure, cardiomyopathy, stroke
KrabbeGalactocerebrosidaseGalactocerebroside, psychosineGloboid cells, optic atrophy, neuropathy
Metachromatic leukodystrophyArylsulphatase ACerebroside sulphateDemyelination, ataxia, dementia
  • Sandhoff disease lacks hexosaminidase A and B: Tay–Sachs plus organomegaly.
  • A cherry-red macula appears because lipid-laden ganglion cells whiten the retina around the fovea, which has no ganglion cells, so the red choroid shows through. It is also seen in central retinal artery occlusion.

Exam trap Tay–Sachs: cherry-red spot without hepatosplenomegaly. Niemann–Pick: cherry-red spot with it.

Mucopolysaccharidoses

  • Hurler (α-L-iduronidase): corneal clouding, gargoyle facies, hepatosplenomegaly, airway obstruction, valve disease, intellectual disability.
  • Hunter (iduronate-2-sulphatase, X-linked): milder, no corneal clouding, aggressive behaviour.
  • Urinary dermatan and heparan sulphate are raised in both.

Glycogen storage diseases

  • Glycogen in the liver maintains blood glucose; glycogen in muscle fuels the muscle itself. So liver defects cause fasting hypoglycaemia and hepatomegaly, while muscle defects cause exercise intolerance.
TypeEnzymeOrganKey features
I von GierkeGlucose-6-phosphataseLiver, kidneySevere fasting hypoglycaemia, lactic acidosis, hyperuricaemia, hyperlipidaemia, big liver and kidneys, doll face
II PompeAcid α-glucosidase (acid maltase)All, esp. heartThe only lysosomal GSD; cardiomegaly, hypotonia, macroglossia, early death
III CoriDebranching enzymeLiver, muscleMilder von Gierke; normal lactate; limit dextrin stored
V McArdleMuscle glycogen phosphorylaseSkeletal muscleCramps and myoglobinuria (dark urine) on exertion, second wind, no lactate rise
  • In von Gierke disease glucose-6-phosphate cannot leave the liver as glucose, so it is pushed into glycolysis (lactate), the pentose pathway (purines, then urate) and fat synthesis. Glucagon gives no glucose rise.
  • In McArdle disease muscle cannot break down its glycogen. On an ischaemic forearm exercise test, lactate fails to rise (no glycogen enters glycolysis) while ammonia rises normally. The second wind after a brief rest comes as blood glucose and fatty acids reach the muscle. Blood glucose is normal because liver phosphorylase is a different isoenzyme.

Exam trap McArdle disease spares the liver: no hypoglycaemia, no hepatomegaly.

Amino acid disorders

DisorderEnzymeCluesManagement
PhenylketonuriaPhenylalanine hydroxylaseFair hair and skin (low melanin), eczema, musty (mousy) urine, intellectual disability, seizuresLow-phenylalanine diet; avoid aspartame; tyrosine becomes essential
AlkaptonuriaHomogentisate oxidaseUrine darkens on standing, blue-black ear and scleral pigment (ochronosis)Benign early; ochronotic arthropathy of spine and large joints later, with disc calcification
Maple syrup urine diseaseBranched-chain α-ketoacid dehydrogenase (thiamine-dependent)Sweet urine, poor feeding, encephalopathy in first weekRestrict leucine, isoleucine, valine (leucine most toxic)
HomocystinuriaCystathionine β-synthaseMarfanoid, downward lens dislocation, thrombosisB6, low methionine
Oculocutaneous albinismTyrosinaseNo melanin, nystagmus, skin cancer riskSun protection
  • PKU is the commonest inborn error of amino acid metabolism and is picked up on heel-prick screening. A minority have tetrahydrobiopterin (BH4) deficiency, which also blocks dopamine and serotonin synthesis and does not respond to diet alone. Maternal PKU (high maternal phenylalanine) causes microcephaly and heart defects in the fetus.

Sugar disorders: galactose and fructose

DisorderEnzymePicture
Classic galactosaemiaGalactose-1-phosphate uridyltransferaseVomiting, jaundice, hepatomegaly, cataract, intellectual disability once milk feeds start; risk of E. coli sepsis
Galactokinase deficiencyGalactokinaseCataracts only in an otherwise well infant
Hereditary fructose intoleranceAldolase BVomiting, hypoglycaemia, liver failure after weaning onto fruit, juice or sucrose
Essential fructosuriaFructokinaseHarmless fructose in urine
  • Cataracts in both galactose disorders come from galactitol, made by aldose reductase and trapped in the lens.
  • In HFI, fructose-1-phosphate builds up and traps phosphate, so ATP falls and glycogenolysis and gluconeogenesis stop. Treatment is strict avoidance of fructose, sucrose (glucose plus fructose) and sorbitol.

Remember The earlier the enzyme in the pathway, the milder the disease: galactokinase and fructokinase defects are mild; GALT and aldolase B defects trap toxic phosphorylated sugars.

Peroxisomal disorders

  • Peroxisomes carry out β-oxidation of very long-chain fatty acids, α-oxidation of phytanic acid, plasmalogen (myelin) synthesis and H₂O₂ breakdown by catalase.
  • Zellweger syndrome: peroxisomes fail to form (PEX genes): hypotonia, seizures, hepatomegaly, facial dysmorphism, early death.
  • X-linked adrenoleukodystrophy (ABCD1): VLCFA build-up in adrenal cortex and white matter: adrenal insufficiency with demyelination in boys.
  • Refsum disease: phytanic acid accumulates: retinitis pigmentosa, neuropathy, ichthyosis.

Purine disorders and gout

  • Gout: monosodium urate crystals, needle-shaped and negatively birefringent; first MTP joint; tophi.
  • Hyperuricaemia mostly from underexcretion (renal impairment, thiazide and loop diuretics, low-dose aspirin, alcohol, ciclosporin, pyrazinamide) and less often overproduction (myeloproliferative disease, tumour lysis, psoriasis, Lesch–Nyhan HGPRT deficiency, von Gierke).
  • Pseudogout: calcium pyrophosphate, rhomboid, weakly positively birefringent; knee; chondrocalcinosis; linked to haemochromatosis, hyperparathyroidism, low magnesium.
  • Acute attack: NSAIDs, colchicine, steroids. Prevention: allopurinol or febuxostat (xanthine oxidase inhibitors), probenecid; rasburicase in tumour lysis.

Copper and iron overload

  • Wilson disease (ATP7B, autosomal recessive): copper cannot enter bile or caeruloplasmin: liver disease, Kayser–Fleischer rings, basal ganglia movement and psychiatric features; low caeruloplasmin, high urinary copper; penicillamine, trientine, zinc.
  • Hereditary haemochromatosis (HFE C282Y): cirrhosis, bronze diabetes, cardiomyopathy, hypogonadism, 2nd and 3rd MCP arthropathy; venesection.

How FCPS asks about this

  • Commonest lysosomal storage disease: Gaucher disease; glucocerebrosidase (β-glucosidase) deficiency, crumpled tissue-paper macrophages.
  • Cherry-red spot without organomegaly: Tay–Sachs (hexosaminidase A); with organomegaly, Niemann–Pick.
  • Infant with fasting hypoglycaemia, hepatomegaly and lactic acidosis: von Gierke disease; glucose-6-phosphatase.
  • Exercise cramps, dark urine, second wind, no lactate rise: McArdle disease; muscle glycogen phosphorylase.
  • Fair child with eczema and musty urine: phenylketonuria; phenylalanine hydroxylase; avoid aspartame.
  • Well infant with cataracts and galactose in urine: galactokinase deficiency; classic GALT deficiency adds liver failure and E. coli sepsis.
  • Organelle defective in Zellweger syndrome: peroxisome.

Test yourself on this topic

5 of the 17 questions in our bank on this topic. Choose an answer to see why every option is right or wrong.

Question 1Medium

In maple syrup urine disease, which amino acids must be restricted in the diet?

Question 2Medium

An otherwise well infant has bilateral cataracts but no liver disease, vomiting or developmental delay. Galactose is found in the urine. Which enzyme is most likely deficient?

Question 3Medium

Which is the most common lysosomal storage disease, and how is its non-neurological form treated?

Question 4Hard

A 7-year-old boy has worsening behaviour and school performance, then visual and gait problems, with skin darkening and low cortisol. Very long-chain fatty acids are raised. What is the diagnosis?

Question 5Medium

In McArdle disease, what happens to blood lactate during an ischaemic forearm exercise test, and why?

Practise all 17 questions on this topic

Where this sits in the CPSP syllabus

  • Paper 1: Biomolecules and metabolism, Lysosomal storage and other metabolic disorders

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