Genital tract anomalies
Genital tract anomalies: uterine malformations, vaginal obstruction and DSD
Uterine malformations, vaginal agenesis and septa, imperforate hymen, Turner syndrome, CAH and androgen insensitivity explained for FCPS Part 1. Each anomaly is traced to the embryological step that failed, so karyotype, internal organs and external genitalia follow logically.
Three steps that build the female tract
- Müllerian (paramesonephric) ducts form lateral to the mesonephric ducts, then their caudal parts fuse in the midline to make the uterus, cervix and upper vagina; finally the midline septum is resorbed to leave a single cavity.
- The vaginal plate (from the sinovaginal bulbs of the urogenital sinus) canalises to form the lower vagina; the hymen is the thin membrane left where the plate meets the sinus.
- The gonad decides the hormonal environment: AMH from Sertoli cells removes the Müllerian ducts, and testosterone (and dihydrotestosterone) builds Wolffian ducts and masculinises the external genitalia.
- Ask which step failed and every clinical feature follows.
Uterine (Müllerian) malformations
| Anomaly | Step that failed | Key features |
|---|---|---|
| Agenesis (MRKH) | Ducts do not form | No uterus, short blind vagina, normal ovaries |
| Unicornuate | One duct fails | One horn and tube, often a rudimentary horn; ipsilateral renal agenesis |
| Didelphys | Complete failure of fusion | Two uterine bodies, two cervices, often a longitudinal vaginal septum |
| Bicornuate | Partial (incomplete) failure of fusion of the upper ducts | Heart-shaped cavity with an indented outer fundus; one cervix |
| Septate | Fusion normal, septum not resorbed | Smooth convex outer fundus, midline septum; commonest significant anomaly |
| Arcuate | Minimal septal remnant | Slight fundal dip in the cavity; mildest form |
| T-shaped (DES) | Drug effect on ducts | Small T-shaped cavity |
- The outer fundal contour separates septate (smooth) from bicornuate (notched) on 3D ultrasound or MRI; hysterosalpingography shows only the cavity and cannot tell them apart.
- The septum is poorly vascularised, so implantation on it fails: septate uterus has the strongest link with recurrent miscarriage, and it is the one treated by hysteroscopic resection.
- Other obstetric effects: preterm labour, malpresentation (breech, transverse lie), retained placenta, and rupture of a pregnancy in a rudimentary horn.
- The Müllerian duct depends on the mesonephric duct, which also gives the ureteric bud, so renal anomalies (agenesis, pelvic kidney) accompany Müllerian defects; image the kidneys.
Müllerian agenesis (MRKH syndrome)
- 46,XX woman with primary amenorrhoea, normal breasts and normal pubic and axillary hair.
- Uterus and upper vagina absent; a short blind vaginal pouch remains, formed by the sinovaginal bulbs (urogenital sinus).
- Ovaries are normal and ovulate, because they arise from the genital ridge, not the Müllerian ducts; secondary sexual characteristics and hormone levels are normal.
- Renal and skeletal (cervical spine) anomalies may coexist.
- After Turner syndrome (gonadal dysgenesis) it is the second commonest cause of primary amenorrhoea.
Vaginal and hymenal obstruction
| Lesion | Embryology | Findings |
|---|---|---|
| Imperforate hymen | Membrane at sinus–vaginal plate junction fails to perforate | Cyclical pain, no periods, tense bluish bulging membrane at the introitus, haematocolpos; may cause urinary retention |
| Transverse vaginal septum | Failed canalisation or fusion of vaginal plate with Müllerian part | Normal hymen, probe stops short; blood collects above the septum; uterus present |
| Longitudinal vaginal septum | Failed resorption of lower midline | Often with didelphys; dyspareunia |
| Vaginal atresia (lower) | Vaginal plate fails to form | Uterus and cervix present; lower vagina replaced by fibrous tissue |
- Where the blood collects (haematocolpos, then haematometra, then haematosalpinx) shows the level of the block.
- An imperforate hymen is the commonest obstructive cause of primary amenorrhoea and is cured by a simple cruciate incision; the anatomy above it is normal.
Diethylstilboestrol (DES)
- DES is a synthetic non-steroidal oestrogen once given in pregnancy to prevent miscarriage.
- It is a teratogen of the Müllerian system in female offspring: T-shaped uterine cavity, cervical hoods and collars, vaginal adenosis (glandular Müllerian epithelium persisting in the upper vagina) and a later risk of clear cell adenocarcinoma of the vagina and cervix.
- It does not virilise; it is an oestrogen, not an androgen.
External genitalia and their homologues
| Indifferent structure | Female | Male |
|---|---|---|
| Genital tubercle | Clitoris | Glans and corpora of penis |
| Urethral (urogenital) folds | Labia minora | Ventral penis around the spongy (penile) urethra |
| Labioscrotal swellings | Labia majora | Scrotum |
| Urogenital sinus | Vestibule, lower vagina, greater vestibular glands | Prostatic urethra, bulbourethral glands |
- Androgen exposure of a female fetus fuses the labioscrotal swellings into a rugose scrotum-like sac; fusion of the urethral folds would instead close a penile urethra.
- Fusion only happens before about 12 weeks; androgen exposure after that enlarges the clitoris alone.
- Causes of a virilised 46,XX baby: congenital adrenal hyperplasia (commonest), maternal androgenic progestogens or danazol, maternal androgen-secreting tumours, and placental aromatase deficiency.
Disorders of sex development: reasoning
- Three questions: what is the gonad, did it make AMH, did it make testosterone (and could tissues respond)?
- AMH absent: uterus present. Androgen absent or not acting: female external genitalia and no Wolffian ducts.
- Hormones act locally on the duct on their own side, so a testis on one side and a streak on the other gives asymmetric internal organs.
- A 46,XX baby with ambiguous genitalia is CAH until proven otherwise; the commonest cause of an undervirilised 46,XY individual (old term male pseudohermaphroditism) is androgen insensitivity.
Key syndromes compared
| Condition | Karyotype | Gonad | Uterus | External genitalia and other clues |
|---|---|---|---|---|
| Congenital adrenal hyperplasia (21-hydroxylase) | 46,XX | Ovaries | Present | Virilised, clitoromegaly, labial fusion; raised 17-hydroxyprogesterone; salt wasting in week 2 |
| Complete androgen insensitivity | 46,XY | Testes (inguinal) | Absent (AMH works) | Female, blind vagina, breasts present, scanty pubic hair, high testosterone; gonadal tumour risk |
| Swyer (pure gonadal dysgenesis) | 46,XY | Streaks | Present (no AMH) | Female, no breasts, high FSH and LH, low testosterone; often tall; gonadoblastoma risk |
| Turner | 45,X (or mosaic) | Streaks | Present | Female, short stature, no puberty, webbed neck, coarctation, horseshoe kidney |
| Mixed gonadal dysgenesis | 45,X/46,XY | Testis one side, streak the other | Hemi-uterus on streak side | Ambiguous |
| Persistent Müllerian duct syndrome | 46,XY | Testes | Present | Normal male; defect of AMH or its receptor; uterus found at hernia repair |
| Placental aromatase deficiency | 46,XX | Ovaries | Present | Baby virilised and mother virilised in pregnancy |
- In Swyer syndrome the uterus is present for one reason: the streak gonads made no AMH. Breasts are absent because there is no ovarian oestrogen either.
Congenital adrenal hyperplasia: enzymes
| Enzyme deficient | Cortisol | Aldosterone | Androgens | Blood pressure |
|---|---|---|---|---|
| 21-hydroxylase (about 90%) | Low | Low (salt wasting) | High | Low or normal |
| 11-beta-hydroxylase | Low | Low, but deoxycorticosterone high | High | Hypertension |
| 17-alpha-hydroxylase | Low | Low, deoxycorticosterone high | Low (no virilisation) | Hypertension, hypokalaemia |
- Low cortisol removes negative feedback, ACTH rises and the adrenals become hyperplastic, pushing precursors into the open androgen pathway.
- The 21-hydroxylase form is the one that does not cause hypertension.
Turner syndrome
- Karyotype 45,X (written 45,XO in older papers); about half are mosaics or have a structural X (for example isochromosome Xq).
- No Barr body in classic 45,X, because there is no second X to inactivate. A Barr body in a Turner phenotype points to mosaicism (45,X/46,XX) or a structurally abnormal second X.
- Features: short stature, webbed neck, low posterior hairline, shield chest, cubitus valgus, lymphoedema of hands and feet at birth (cystic hygroma in utero), coarctation of the aorta and bicuspid aortic valve, horseshoe kidney, primary amenorrhoea with high FSH; intelligence usually normal.
- Germ cells reach the ovary but oocytes are lost by accelerated atresia, leaving fibrous streaks. Turner is the commonest cause of primary amenorrhoea overall.
- A boy with short webbed neck, low hairline and fused cervical vertebrae has Klippel–Feil anomaly or Noonan syndrome, not Turner, because Turner occurs only in phenotypic females.
Remember Breasts tell you about oestrogen, pubic hair tells you about androgen action, and a uterus tells you about AMH.
Exam trap MRKH and androgen insensitivity both have breasts, a blind vagina and no uterus; normal pubic hair and 46,XX mean MRKH.
Exam trap The uterus is absent in androgen insensitivity because AMH worked, not because of androgen; in Swyer syndrome the uterus is present because AMH was never made.
How FCPS asks about this
- Bicornuate uterus is due to: incomplete fusion of the paramesonephric ducts; septate uterus is failed septal resorption.
- 46,XX with ambiguous genitalia: congenital adrenal hyperplasia, usually 21-hydroxylase deficiency with raised 17-hydroxyprogesterone.
- CAH enzyme that does not cause hypertension: 21-hydroxylase; 11-beta and 17-alpha deficiencies raise deoxycorticosterone and cause hypertension.
- Turner karyotype and Barr body: 45,X with no Barr body; a Barr body suggests 45,X/46,XX mosaicism.
- 46,XY female with no breasts and a uterus: Swyer syndrome; streak gonads made no AMH.
- Virilised 46,XX baby with scrotum-like labia: fused labioscrotal swellings from androgen exposure before 12 weeks.
- T-shaped uterus and vaginal adenosis: diethylstilboestrol in utero; risk of clear cell adenocarcinoma.
Test yourself on this topic
5 of the 19 questions in our bank on this topic. Choose an answer to see why every option is right or wrong.
A 24-year-old woman has a T-shaped uterine cavity on hysterosalpingography and glandular (adenosis) patches in the upper vagina. Her mother took a synthetic oestrogen in pregnancy to prevent miscarriage. Which drug was it?
Answer: Diethylstilboestrol
Diethylstilboestrol (DES), a non-steroidal synthetic oestrogen, was once given to prevent miscarriage. Exposure in early pregnancy disturbs differentiation of the paramesonephric duct derivatives in the female fetus. Daughters may have a T-shaped or hypoplastic uterus, cervical anomalies and vaginal adenosis, with a raised risk of clear cell adenocarcinoma of the vagina and cervix. Danazol, an androgenic drug, instead virilises a female fetus.
DES daughters
- Synthetic non-steroidal oestrogen
- T-shaped uterus, cervical anomalies
- Vaginal adenosis
- Risk of clear cell adenocarcinoma
Remember T-shaped cavity plus adenosis: think DES.
Exam trap DES is a teratogen of the Müllerian system, not a virilising drug.
Why the other options are wrong
- Ethinylestradiol Contraceptive oestrogen; not linked with the DES pattern.
- Medroxyprogesterone A progestogen, not an oestrogen.
- Clomifene citrate Ovulation inducer; not given in pregnancy for miscarriage.
- Danazol Androgenic; causes virilisation, not a T-shaped uterus.
During repair of an inguinal hernia in a 2-year-old boy with normal male genitalia and a 46,XY karyotype, the surgeon finds a small uterus and uterine tubes in the hernial sac attached to the testis. Defective action of which hormone explains this?
Answer: Anti-Müllerian hormone
In persistent Müllerian duct syndrome, mutations in the AMH gene or its type II receptor stop the paramesonephric ducts from regressing. Testosterone and DHT act normally, so the external genitalia and Wolffian derivatives are male. The retained uterus and tubes can drag a testis into the opposite groin, giving 'hernia uteri inguinalis'. INSL3 helps testicular descent but does not regress the ducts.
Persistent Müllerian ducts
- 46,XY, normal male genitalia
- Uterus and tubes persist
- Defect in AMH or its receptor
- Found at hernia repair
Remember A male with a uterus: AMH has failed.
Exam trap Androgens and AMH work separately, so one can fail while the other works.
Why the other options are wrong
- Testosterone Normal action; the vas and genitalia are male.
- Dihydrotestosterone Normal action; genitalia are fully male.
- Insulin-like peptide 3 Controls gubernaculum growth, not Müllerian regression.
- Oestradiol Not responsible for duct regression.
A 46,XY woman with complete androgen insensitivity has normal breasts and a short blind vagina, but MRI shows no uterus or tubes. Which of the following best explains the absence of her uterus?
Answer: Her testes secreted AMH normally
Regression of the paramesonephric ducts depends on AMH from fetal Sertoli cells acting on AMH type II receptors, not on androgen. In androgen insensitivity the testes and their Sertoli cells are normal, so AMH is made and the uterus, tubes and upper vagina disappear. The mesonephric ducts also regress because they cannot respond to testosterone. She is therefore left with neither male nor female internal ducts.
Why no uterus in AIS
- Sertoli cells make AMH normally
- AMH removes Müllerian ducts
- Androgen resistance removes Wolffian ducts
- Result: no internal ducts
Remember AMH works even when androgen does not.
Exam trap Do not blame androgen for Müllerian regression; that is AMH's job.
Why the other options are wrong
- Her androgen receptors regressed the ducts The receptors are non-functional and do not regress ducts anyway.
- Her ovaries failed to make oestrogen She has testes, not ovaries.
- Her mesonephric ducts replaced them They regress too, because androgen action is absent.
- Her testosterone was converted to DHT DHT forms but cannot act; it does not affect Müllerian ducts.
A 16-year-old girl with primary amenorrhoea, normal breasts and normal pubic hair has no uterus on ultrasound. Examination shows a blind vaginal pouch 2 cm deep. Which embryonic structure formed this short lower vagina?
Answer: Sinovaginal bulbs
This picture fits Müllerian agenesis (MRKH syndrome): the paramesonephric ducts failed, so the uterus and upper vagina are absent. The lower part of the vagina develops from the sinovaginal bulbs, outgrowths of the urogenital sinus that form the vaginal plate, which then canalises. Because the sinus is normal, a short blind lower vagina is present. Ovaries and secondary sexual characteristics are normal because the ovaries do not come from the Müllerian ducts.
Two origins of the vagina
- Upper vagina: paramesonephric ducts
- Lower vagina: sinovaginal bulbs
- MRKH: short blind pouch remains
- Ovaries normal: not Müllerian
Remember Sinus makes the bottom, ducts make the top.
Exam trap A blind pouch in MRKH is the sinus part; do not credit it to the absent ducts.
Why the other options are wrong
- Fused paramesonephric ducts These are absent here; they form the uterus and upper vagina.
- Caudal mesonephric ducts These regress in females.
- Genital tubercle Becomes the clitoris.
- Labioscrotal swellings Become the labia majora.
A 46,XX newborn whose mother took a high-dose androgenic progestogen in early pregnancy has the labia majora fused in the midline, forming a rugose scrotum-like sac. Which embryonic structures have fused?
Answer: Labioscrotal swellings
The labioscrotal (genital) swellings lie lateral to the urogenital folds. Without androgens they stay apart as the labia majora; under androgen they fuse in the midline to form the scrotum. Androgen exposure of a female fetus in the first trimester therefore causes labioscrotal fusion. The urogenital folds form the labia minora, and the genital tubercle forms the clitoris.
External genital homologues
- Labioscrotal swellings: labia majora / scrotum
- Urogenital folds: labia minora / penile urethra
- Genital tubercle: clitoris / penis
- Androgen early: labial fusion
Remember Majora and scrotum come from the same swellings.
Exam trap Labia minora match the penile urethra, not the scrotum.
Why the other options are wrong
- Urogenital (urethral) folds Form the labia minora; fusion makes the penile urethra.
- Genital tubercle Forms the clitoris; enlarges under androgen.
- Urorectal septum Divides the cloaca; not a genital fold.
- Sinovaginal bulbs Form the lower vagina.
Where this sits in the CPSP syllabus
- Obstetrics & Gynaecology, Paper 2: Embryology, Genital tract anomalies: uterine malformations, vaginal agenesis, imperforate hymen, intersex